FastQCFastQC Report
Tue 19 Sept 2023
SRR18098635_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18098635_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28191817
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTTT1020790.3620873390317481No Hit
GTCAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGAT585170.2075673235251208No Hit
CGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCCC561090.1990258378876395No Hit
CAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGATCA500500.17753378577904363No Hit
GTCGTAATTGAATTGATCTAATCTGGATTCCTTGCCCTGAAGAATAACAT496630.17616104701587698No Hit
GTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGT483240.1714114418378922No Hit
GTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGG482590.17118087847973756No Hit
GTCCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTC482220.1710496347220188No Hit
CCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCC474970.16847796649644825No Hit
CCGCAAAGATCGATTTATTATAGCCGGGACACTTCAGAACGGACTCTCCC437430.15516204578087323No Hit
GTTCGTATGAATTTTGGTATTTTAGTCGTGAACCTTTGATATGTCTGTGT425480.15092322711941553No Hit
AGCAGATCTTATAAGGGTTCGTGATGCTCCTGAATCGAGAAGGAGGTGTC412560.14634033698501947No Hit
CTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAGTTAGCCT408020.14472994060652422No Hit
CGGCAAAGCAAAATTTTTATTCAAAATTATAGATGGCCGAACCGCTAAGG375190.13308471745542333No Hit
CCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTT349430.12394731421532709No Hit
GTCTGACATATTTTTTAGTGGATGTCATATCAGAGTCCGCTGAGGATGAA341490.12113089411725396No Hit
GCCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGC335710.1190806537939715No Hit
GTCAAGATCATCGCGCCATAAAATATTGTAATTACTTCCAAAGGAAAAAA335520.1190132583508186No Hit
GTCGTGTAATGGATAAACCCAACGGAATTTTGTTGTCTCATCAGTAAATG325570.1154838654067597No Hit
CCTCGATATATTTTTCTTTTTCTTTAATATCTTTATTATAGGTGATTGCC322640.11444455673077049No Hit
CGGAGATATTTGATGGAAGCAAGTACTTTTTAGATACCCAGTAAAAGTCT316980.11243688195053196No Hit
GTCGGAGTGGAATTCGACAATGTTCTTGGTCTTGTAAGAGTAAGAGAAAG305490.10836123120407598No Hit
GCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGGTA294300.10439199431522983No Hit
GTCGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGG291140.10327110168173977No Hit
CTCGGAAAGACAGGGAAGAGTATGAAGCAAAAAGCCAAACTAAGGGAGAA287980.1021502090482497No Hit
CTCAGGATGTAGTTCGATGTCAGATTGGAAGTCATGGTCAGATTCTATGT286520.1016323282745486No Hit
GGCGTTTTGATAGGAACAATATTGTGCGATGAATTATTTTCCGGTGGAGA285830.10138757640204601No Hit
GTTATTTTTAAGTGAGTATCGAATTGTCTGTGCATTGGCATGCGCAAGCA284680.10097965661454172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)