FastQCFastQC Report
Tue 19 Sept 2023
SRR18098636_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18098636_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23927464
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTC1746300.7298307919301436No Hit
CTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAGTTAGCCT1203250.5028740195785061No Hit
GTCAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGAT1078850.4508835537272149No Hit
CTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTTT749060.313054488348619No Hit
GTACGGTATTGGATTGCATGCCTGAGTCGTAAGTGTCAGGATGCTGAATA713020.2979922987241774No Hit
CCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTT625330.26134403545649465No Hit
GTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGG597060.24952916029880975No Hit
GTCGTGTAATGGATAAACCCAACGGAATTTTGTTGTCTCATCAGTAAATG556180.2324441904917295No Hit
GTCCGTATTGGTTTGATTGATTTTACTGCTTTTACAGCTGCAATCAGGTG536320.22414410486627417No Hit
CCTCGGTATTCTGTTCAGAAACAGTAGTTGGCGTTTTGATAGGAACAATA523850.21893252038745098No Hit
AGCCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTG516740.2159610395819632No Hit
GTTCGTATGAATTTTGGTATTTTAGTCGTGAACCTTTGATATGTCTGTGT497940.20810395953369734No Hit
CAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGATCA437400.18280249005912202No Hit
CTCAGGATGTAGTTCGATGTCAGATTGGAAGTCATGGTCAGATTCTATGT413810.17294352631770754No Hit
GGCGTTTTGATAGGAACAATATTGTGCGATGAATTATTTTCCGGTGGAGA398090.1663736700220299No Hit
GTCCGTGCTGGGAGAGTTATTAGATGTGGATACATTGTGAGCCCTGGCTG375400.1568908430914367No Hit
AGCAGATCTTATAAGGGTTCGTGATGCTCCTGAATCGAGAAGGAGGTGTC360980.15086429552250083No Hit
GGAGGTCTTATGTATAATTCTTCTTTGATGTCTGCATACAAATATGCCGA344810.1441063708214126No Hit
CTCAGGATGTAGTTCAATGTCGGATTGGAAGTCATGGTCAGATTCTATGT329830.13784578257018798No Hit
CTCGGAAAGACAGGGAAGAGTATGAAGCAAAAAGCCAAACTAAGGGAGAA329510.13771204503745152No Hit
GGGGGTTCTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAG326500.1364540763701494No Hit
ATCGGTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGG322050.13459428880553326No Hit
GTCGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGG316130.1321201444499091No Hit
GCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGGTA315750.1319613311297846No Hit
GTCTGACATATTTTTTAGTGGATGTCATATCAGAGTCCGCTGAGGATGAA309690.12942867660358826No Hit
GGTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGG301510.12601001092301298No Hit
GTCTAGATGGTTGTTCAATGGCGTCAATGGCTTCCAACAAAGTCTTACCC290380.12135845236252367No Hit
GTCCAGGGAGTTCATCATCAGAATGATTAGTGTGATTTACCGTAGATTCA270960.11324225584458095No Hit
GTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGT263270.11002837576100835No Hit
CCCGCAAAGATCGATTTATTATAGCCGGGACACTTCAGAACGGACTCTCC262660.1097734385892295No Hit
CGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGGAA262320.10963134246069704No Hit
GGTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAG256730.10729511493570736No Hit
GTACGGAGATATTTGATGGAAGCAAGTACTTTTTAGATACCCAGTAAAAG255640.10683957146482385No Hit
GGCTCGGTAGGTTTGTTTTTGTGCCATATCAGTTGTTTATCTCTAGTGTC250030.10449498534403814No Hit
GTGCCATATTAATTGTTTATCTCTAGTGTCCCACATGAATTGTATTAACT246740.10311999633559162No Hit
CGGCAAAGCAAAATTTTTATTCAAAATTATAGATGGCCGAACCGCTAAGG245520.10261012199203393No Hit
GCCACAATGTGCGAGTAAATCCTGATGGCACCGCCAAATTAAACCGCCGA245220.10248474305509352No Hit
CTCCTGTAATTAGGTTTGCTGTTTCTCGATCCCTGTTGTTCTTCATAAAT244430.10215457852115044No Hit
CTCAGGATGTAGTTCAATGTCAGATTGGAAGTCATGGTCAGATTCTATGT241980.10113065053613705No Hit
CCTCGATATATTTTTCTTTTTCTTTAATATCTTTATTATAGGTGATTGCC239920.10026971516914622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)