FastQCFastQC Report
Tue 19 Sept 2023
SRR18098637_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18098637_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5815780
Total Bases587.3 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTC431830.7425143316975539No Hit
CTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAGTTAGCCT292600.503113941724068No Hit
GTCAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGAT264010.4539545856273793No Hit
CTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTTT182320.31349191338049237No Hit
GTACGGTATTGGATTGCATGCCTGAGTCGTAAGTGTCAGGATGCTGAATA171180.2943371310469103No Hit
CCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTT155330.26708369298701123No Hit
GTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGG145930.25092077073066726No Hit
GTCGTGTAATGGATAAACCCAACGGAATTTTGTTGTCTCATCAGTAAATG136340.2344311511095674No Hit
GTCCGTATTGGTTTGATTGATTTTACTGCTTTTACAGCTGCAATCAGGTG133270.22915240947903806No Hit
CCTCGGTATTCTGTTCAGAAACAGTAGTTGGCGTTTTGATAGGAACAATA127130.21859492621797935No Hit
AGCCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTG125890.21646279604799357No Hit
GTTCGTATGAATTTTGGTATTTTAGTCGTGAACCTTTGATATGTCTGTGT122940.21139038959520476No Hit
CAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGATCA109050.18750709277173483No Hit
CTCAGGATGTAGTTCGATGTCAGATTGGAAGTCATGGTCAGATTCTATGT102030.175436484873912No Hit
GGCGTTTTGATAGGAACAATATTGTGCGATGAATTATTTTCCGGTGGAGA97980.16847267262516807No Hit
GTCCGTGCTGGGAGAGTTATTAGATGTGGATACATTGTGAGCCCTGGCTG91240.15688351347540658No Hit
AGCAGATCTTATAAGGGTTCGTGATGCTCCTGAATCGAGAAGGAGGTGTC88020.1513468528727015No Hit
CTCGGAAAGACAGGGAAGAGTATGAAGCAAAAAGCCAAACTAAGGGAGAA85520.1470482033364398No Hit
GGAGGTCTTATGTATAATTCTTCTTTGATGTCTGCATACAAATATGCCGA83820.14412512165178187No Hit
GTCTGACATATTTTTTAGTGGATGTCATATCAGAGTCCGCTGAGGATGAA80080.1376943419455344No Hit
CTCAGGATGTAGTTCAATGTCGGATTGGAAGTCATGGTCAGATTCTATGT79780.137178504001183No Hit
GCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGGTA78090.13427261691467007No Hit
GGGGGTTCTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAG77500.13325813562411232No Hit
GTCGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGG76550.13162464880033287No Hit
ATCGGTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGG76520.13157306500589774No Hit
GGTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGG75570.12993957818211832No Hit
GTCTAGATGGTTGTTCAATGGCGTCAATGGCTTCCAACAAAGTCTTACCC73040.12558934485142148No Hit
CCCGCAAAGATCGATTTATTATAGCCGGGACACTTCAGAACGGACTCTCC66290.11398299110351492No Hit
GTCCAGGGAGTTCATCATCAGAATGATTAGTGTGATTTACCGTAGATTCA65650.11288253682223194No Hit
CGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGGAA65150.1120228069149796No Hit
GTACGGAGATATTTGATGGAAGCAAGTACTTTTTAGATACCCAGTAAAAG64520.11093954723184164No Hit
GGTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAG64150.11030334710047492No Hit
GTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGT63720.10956397938023792No Hit
GCCACAATGTGCGAGTAAATCCTGATGGCACCGCCAAATTAAACCGCCGA63210.10868705487484052No Hit
GGCTCGGTAGGTTTGTTTTTGTGCCATATCAGTTGTTTATCTCTAGTGTC63110.10851510889339006No Hit
GTGCCATATTAATTGTTTATCTCTAGTGTCCCACATGAATTGTATTAACT62240.10701917885477098No Hit
GCCAGGGTCACAATGTCGTTTGCCTCTTGGGTATCAGATTGCATTTTTTC60010.10318478346842555No Hit
CGGCAAAGCAAAATTTTTATTCAAAATTATAGATGGCCGAACCGCTAAGG59530.10235944275746331No Hit
CCTCGATATATTTTTCTTTTTCTTTAATATCTTTATTATAGGTGATTGCC59250.101877994009402No Hit
CTCAGGATGTAGTTCAATGTCAGATTGGAAGTCATGGTCAGATTCTATGT59060.10155129664464611No Hit
CTCCTGTAATTAGGTTTGCTGTTTCTCGATCCCTGTTGTTCTTCATAAAT58810.10112143169101996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)