FastQCFastQC Report
Tue 19 Sept 2023
SRR18098638_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18098638_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24303175
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTTT1167780.4805051191871021No Hit
GTCAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGAT751710.3093052656700205No Hit
GTCCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTC639060.2629532972543711No Hit
CAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGATCA604640.24879053868476034No Hit
GTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGG554770.22827058604482747No Hit
CTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAGTTAGCCT530390.21823897494874642No Hit
GTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGT516450.21250309887494123No Hit
GTCGTAATTGAATTGATCTAATCTGGATTCCTTGCCCTGAAGAATAACAT513810.2114168210532163No Hit
CGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCCC475620.19570282483667256No Hit
GTTCGTATGAATTTTGGTATTTTAGTCGTGAACCTTTGATATGTCTGTGT473350.19476879049753787No Hit
CCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTT451540.18579465440215115No Hit
AGCAGATCTTATAAGGGTTCGTGATGCTCCTGAATCGAGAAGGAGGTGTC445580.18334229992583273No Hit
CCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCC409350.1684347826981454No Hit
CCGCAAAGATCGATTTATTATAGCCGGGACACTTCAGAACGGACTCTCCC407510.16767767997391286No Hit
GTCTGACATATTTTTTAGTGGATGTCATATCAGAGTCCGCTGAGGATGAA385030.1584278597343763No Hit
GTCGTGTAATGGATAAACCCAACGGAATTTTGTTGTCTCATCAGTAAATG382720.15747736664036693No Hit
CCTCGATATATTTTTCTTTTTCTTTAATATCTTTATTATAGGTGATTGCC364060.14979935749135656No Hit
CTCGGAAAGACAGGGAAGAGTATGAAGCAAAAAGCCAAACTAAGGGAGAA360450.1483139548639221No Hit
GTCGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGG339240.1395867000916547No Hit
CTCAGGATGTAGTTCGATGTCAGATTGGAAGTCATGGTCAGATTCTATGT336340.13839344036324472No Hit
GTACGGTATTGGATTGCATGCCTGAGTCGTAAGTGTCAGGATGCTGAATA330120.13583410398024126No Hit
CGGAGATATTTGATGGAAGCAAGTACTTTTTAGATACCCAGTAAAAGTCT323100.1329455924997454No Hit
GTCCGTATTGGTTTGATTGATTTTACTGCTTTTACAGCTGCAATCAGGTG317560.1306660549496105No Hit
GCCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGC314330.1293370104934849No Hit
CGGCAAAGCAAAATTTTTATTCAAAATTATAGATGGCCGAACCGCTAAGG312040.1283947467769129No Hit
GCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGGTA310100.12759649716549382No Hit
GTCCGTGCTGGGAGAGTTATTAGATGTGGATACATTGTGAGCCCTGGCTG307220.12641146681452115No Hit
CCTCGGTATTCTGTTCAGAAACAGTAGTTGGCGTTTTGATAGGAACAATA301530.12407020893360642No Hit
GGCGTTTTGATAGGAACAATATTGTGCGATGAATTATTTTCCGGTGGAGA297950.12259715037232789No Hit
GTTATTTTTAAGTGAGTATCGAATTGTCTGTGCATTGGCATGCGCAAGCA293850.12091012799767932No Hit
GGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGTAG284290.11697648558264508No Hit
CTCAGGATGTAGTTCAATGTCGGATTGGAAGTCATGGTCAGATTCTATGT280790.11553634453111579No Hit
GTCAAGATCATCGCGCCATAAAATATTGTAATTACTTCCAAAGGAAAAAA266460.10963999559728307No Hit
GTCGGAGTGGAATTCGACAATGTTCTTGGTCTTGTAAGAGTAAGAGAAAG263680.10849611213349696No Hit
GGTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGG257230.10584213790996444No Hit
GGGGGTTCTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAG246250.10132420969688116No Hit
GGAGGTCTTATGTATAATTCTTCTTTGATGTCTGCATACAAATATGCCGA244720.10069466232292695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)