FastQCFastQC Report
Tue 19 Sept 2023
SRR18098639_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18098639_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5879818
Total Bases593.8 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTTT287320.48865458080505214No Hit
GTCAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGAT183180.31154025515755757No Hit
GTCCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTC159510.2712839070869201No Hit
CAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGATCA146660.24942948914405175No Hit
GTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGG133480.2270138293396156No Hit
CTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAGTTAGCCT128910.21924147992335818No Hit
GTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGT127760.21728563707243997No Hit
GTCGTAATTGAATTGATCTAATCTGGATTCCTTGCCCTGAAGAATAACAT125560.21354402466198782No Hit
GTTCGTATGAATTTTGGTATTTTAGTCGTGAACCTTTGATATGTCTGTGT114590.1948869845971423No Hit
CGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCCC111330.18934259529801772No Hit
CCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTT110150.1873357304596843No Hit
AGCAGATCTTATAAGGGTTCGTGATGCTCCTGAATCGAGAAGGAGGTGTC107220.18235258302212756No Hit
CCGCAAAGATCGATTTATTATAGCCGGGACACTTCAGAACGGACTCTCCC102820.17486935820122324No Hit
CCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCC99100.1685426317617314No Hit
GTCTGACATATTTTTTAGTGGATGTCATATCAGAGTCCGCTGAGGATGAA96520.16415474084401932No Hit
CTCGGAAAGACAGGGAAGAGTATGAAGCAAAAAGCCAAACTAAGGGAGAA90320.1536101967781996No Hit
GTCGTGTAATGGATAAACCCAACGGAATTTTGTTGTCTCATCAGTAAATG90100.15323603553715437No Hit
CCTCGATATATTTTTCTTTTTCTTTAATATCTTTATTATAGGTGATTGCC87080.14809982213735187No Hit
GTCGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGG83830.14257244016736573No Hit
CTCAGGATGTAGTTCGATGTCAGATTGGAAGTCATGGTCAGATTCTATGT81370.13838863719931468No Hit
GTACGGTATTGGATTGCATGCCTGAGTCGTAAGTGTCAGGATGCTGAATA78920.13422184156040204No Hit
GCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGGTA78650.13376264367366472No Hit
GCCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGC77510.131823808151885No Hit
CGGCAAAGCAAAATTTTTATTCAAAATTATAGATGGCCGAACCGCTAAGG77460.1317387715061929No Hit
GTCCGTATTGGTTTGATTGATTTTACTGCTTTTACAGCTGCAATCAGGTG77320.131500668898255No Hit
CGGAGATATTTGATGGAAGCAAGTACTTTTTAGATACCCAGTAAAAGTCT76970.13090541237841036No Hit
GTCCGTGCTGGGAGAGTTATTAGATGTGGATACATTGTGAGCCCTGGCTG75290.128048181083156No Hit
GGCGTTTTGATAGGAACAATATTGTGCGATGAATTATTTTCCGGTGGAGA74500.1267046020812209No Hit
CCTCGGTATTCTGTTCAGAAACAGTAGTTGGCGTTTTGATAGGAACAATA73810.12553109637066998No Hit
GTTATTTTTAAGTGAGTATCGAATTGTCTGTGCATTGGCATGCGCAAGCA71660.1218745206059099No Hit
GGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGTAG70830.12046291228742115No Hit
GCCAGGGTCACAATGTCGTTTGCCTCTTGGGTATCAGATTGCATTTTTTC68770.11695940248490685No Hit
CTCAGGATGTAGTTCAATGTCGGATTGGAAGTCATGGTCAGATTCTATGT67990.11563283081211016No Hit
GTCGGAGTGGAATTCGACAATGTTCTTGGTCTTGTAAGAGTAAGAGAAAG64870.11032654412092346No Hit
GTCAAGATCATCGCGCCATAAAATATTGTAATTACTTCCAAAGGAAAAAA63200.10748632015480752No Hit
GGTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGG62450.10621077046942609No Hit
GCCACAATGTGCGAGTAAATCCTGATGGCACCGCCAAATTAAACCGCCGA60160.10231609209672815No Hit
GGAGGTCTTATGTATAATTCTTCTTTGATGTCTGCATACAAATATGCCGA60010.10206098215965187No Hit
GGGGGTTCTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAG59700.10153375495636088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)