FastQCFastQC Report
Tue 19 Sept 2023
SRR18098640_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18098640_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33870506
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTTT2617320.7727431057569675No Hit
GTCAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGAT1587680.4687500092263162No Hit
CAGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGATCA1359240.4013048993126941No Hit
GTCCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTC1292780.3816831080114363No Hit
CTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAGTTAGCCT1092520.32255792104198266No Hit
GTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGT1032120.3047252969884772No Hit
GTTCGTATGAATTTTGGTATTTTAGTCGTGAACCTTTGATATGTCTGTGT939360.2773386379288222No Hit
GTGCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGG925500.2732465821443589No Hit
GTCGTAATTGAATTGATCTAATCTGGATTCCTTGCCCTGAAGAATAACAT883910.260967462369768No Hit
CCTGGAAGTGAAATTGTAGGTCACCAATAGCGTTAATTGGTATATTTCTT882910.26067222024967684No Hit
CGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCCC879010.25952077598132134No Hit
CTCAGGATGTAGTTCGATGTCAGATTGGAAGTCATGGTCAGATTCTATGT843310.2489806322940673No Hit
CTCGGAAAGACAGGGAAGAGTATGAAGCAAAAAGCCAAACTAAGGGAGAA836510.24697298587744745No Hit
GTCGTGTAATGGATAAACCCAACGGAATTTTGTTGTCTCATCAGTAAATG833740.24615516520479502No Hit
CCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGCC810150.23919040359184476No Hit
AGCAGATCTTATAAGGGTTCGTGATGCTCCTGAATCGAGAAGGAGGTGTC765890.2261229873566105No Hit
GTCCGTATTGGTTTGATTGATTTTACTGCTTTTACAGCTGCAATCAGGTG699800.20661043563978643No Hit
GTCTGACATATTTTTTAGTGGATGTCATATCAGAGTCCGCTGAGGATGAA692790.20454078837794745No Hit
CCGCAAAGATCGATTTATTATAGCCGGGACACTTCAGAACGGACTCTCCC646370.19083564916331633No Hit
CCTCGGTATTCTGTTCAGAAACAGTAGTTGGCGTTTTGATAGGAACAATA641230.18931810466604782No Hit
CCTCGATATATTTTTCTTTTTCTTTAATATCTTTATTATAGGTGATTGCC640630.1891409593939931No Hit
GGCGTTTTGATAGGAACAATATTGTGCGATGAATTATTTTCCGGTGGAGA619280.18283754013004708No Hit
CGGAGATATTTGATGGAAGCAAGTACTTTTTAGATACCCAGTAAAAGTCT616680.18206991061781008No Hit
GCCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTGC600370.17725451163912342No Hit
GTCGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGG589880.17415742179936727No Hit
CTCAGGATGTAGTTCAATGTCGGATTGGAAGTCATGGTCAGATTCTATGT573920.16944535756271253No Hit
GTCCGTGCTGGGAGAGTTATTAGATGTGGATACATTGTGAGCCCTGGCTG565780.16704208670517057No Hit
GTACGGTATTGGATTGCATGCCTGAGTCGTAAGTGTCAGGATGCTGAATA548520.16194620771239734No Hit
GGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGGTAG543460.16045228258473612No Hit
GTTATTTTTAAGTGAGTATCGAATTGTCTGTGCATTGGCATGCGCAAGCA538130.15887864208465027No Hit
GCACTTTTTGGTAGGTTGTGAACTGGACCAAATATGTCAGTATGTAGGTA477990.14112278098236855No Hit
GGTGGGAGTTCTTTAAATGGGTCAGGGAATTCGGTAGGAGATTCTGGAGG464930.13726691889397813No Hit
GCCACAATGTGCGAGTAAATCCTGATGGCACCGCCAAATTAAACCGCCGA454900.1343056404294639No Hit
GGGGGTTCTCTGGAACAGCTGATGAAGCAGGTGTTGTTGTCTGTTGAGAG437530.12917728480348065No Hit
GGAGGTCTTATGTATAATTCTTCTTTGATGTCTGCATACAAATATGCCGA435150.1284746085576637No Hit
CGTGCTTATTGTTCAATTGAATCGGTTCAGTAGTTGATTTACTGATGGAA429180.12671201310071953No Hit
GTCAAGATCATCGCGCCATAAAATATTGTAATTACTTCCAAAGGAAAAAA414140.12227157161454866No Hit
CTCAGGATGTAGTTCAATGTCAGATTGGAAGTCATGGTCAGATTCTATGT382510.1129330633560656No Hit
AGGGAATTCGGTAGGAGATTCTGGAGGTAGATCAGGGAGTGGGAGATCAG379150.11194104983255934No Hit
GTAGGAATTGAGAGGGAGCAAATATTTGAAAAGTGTTATACAAGAAGGTG376290.11109665736909866No Hit
CCCGCAAAGATCGATTTATTATAGCCGGGACACTTCAGAACGGACTCTCC374650.11061246029214916No Hit
CGGCAAAGCAAAATTTTTATTCAAAATTATAGATGGCCGAACCGCTAAGG371790.10976806782868848No Hit
AGCCGGGACACTTCAGAACGGACTCTCCCGCCTCCGGGCAGACAGCTCTG349730.10325502665947772No Hit
GTACGGAGATATTTGATGGAAGCAAGTACTTTTTAGATACCCAGTAAAAG344930.1018378644830402No Hit
CTCGGTATTCTGTTCAGAAACAGTAGTTGGCGTTTTGATAGGAACAATAT344810.10180243542862925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)