FastQCFastQC Report
Tue 19 Sept 2023
SRR18113782_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113782_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18779066
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTAAACCATTCGTAGACGACCTGCTTAAAAAAAAAACAAAAAAAAAA2464961.3126105419726413No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA1649850.8785580709924551No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA1197020.6374225427398785No Hit
CCCCTAAACCATTCGTAGACGACCTGCTCAAAAAAAAAACAAAAAAAAAA1180230.6284817359926208No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA1133230.60345386719446No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA975100.5192484013848186No Hit
CCCCTAAACCATTCGTAGACGACCTGCTTCAAAAAAAAAACAAAAAAAAA801580.42684763981339646No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTATGCCG669360.35643945231354957TruSeq Adapter, Index 15 (97% over 36bp)
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA619380.3298247101320162No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG546330.29092501192551323No Hit
GGGCTAAACCATTCGTAGACGACCTGCTTAAAAAAAAAACAAAAAAAAAA546010.290754609414547No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA544920.2901741758615684No Hit
GGGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAA522180.2780649474260328No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA490610.2612536747035236No Hit
GGGCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG488910.26034841136401565No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA471260.2509496478685362No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA424960.22629453456311405No Hit
GGGGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAA399980.21299248855081504No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA397550.21169849448316544No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA383400.2041635084513788No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAA371690.1979278415657094No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA357580.1904141558477935No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAACAAAAAAAA347290.1849346501045366No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA338560.18028585660223995No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA333480.17758071674065154No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA330300.17588734178792492No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA322880.17193613356489615No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA317040.168826287739763No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA307630.16381538890166317No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA303690.1617173079853918No Hit
CCCTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA295650.15743594489736604No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA291320.15513018592085462No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA290310.15459235299561758No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACAAAAAAAAAACAAAAAAAAAA288430.15359123824369114No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA279900.14904894631074836No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA277640.14784547857704958No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA275820.14687631429592932No Hit
GGGCTAAACCATTCGTAGACGACCTGCTCAAAAAAAAAACAAAAAAAAAA268870.14317538476088215No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA266320.14181748975162023No Hit
GGGCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA243940.1298999641409216No Hit
GGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAAA236550.12596473115329593No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA233190.1241755047881508No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA223370.11894627773287553No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATAAAAAAAAAACAAA220650.11749785638966283No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA214760.11436138517219122No Hit
CCCTGGATAACTGTGGTAATTCTAGAGCTAATACATAAAAAAAAAACAAA205220.10928126031401136No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAA204220.10874875246724197No Hit
CCCCTAAACCATTCGTAGACGACCTGCTTAAAAAAAAAAAAAAAAAAAAA201460.1072790308101585No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCAAAAAAAAAACAAA199740.10636311731371517No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA196220.10448868969308697No Hit
CCCCTAAACCATTCGTAGACGACCTGCAAAAAAAAAACAAAAAAAAAAGA188570.10041500466530125No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)