FastQCFastQC Report
Tue 19 Sept 2023
SRR18113783_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113783_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20515390
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTAAACCATTCGTAGACGACCTGCTTAAAAAAAAAACAAAAAAAAAA2841511.385062628592486No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA1969900.9602059721994074No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA1382670.6739672021833365No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA1346400.6562877917504859No Hit
CCCCTAAACCATTCGTAGACGACCTGCTCAAAAAAAAAACAAAAAAAAAA1330540.6485570101275189No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA1139330.5553538099933757No Hit
CCCCTAAACCATTCGTAGACGACCTGCTTCAAAAAAAAAACAAAAAAAAA918090.447512818425582No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA735090.3583114920067325No Hit
GGGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAA641330.3126092167879821No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA638290.31112740240375636No Hit
GGGCTAAACCATTCGTAGACGACCTGCTTAAAAAAAAAACAAAAAAAAAA630700.307427740832614No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG592210.2886662159481248No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA578210.28184207075761175No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA531330.2589909331482365No Hit
GGGCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG515090.25107492472724136No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA488480.23810417447584473No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA458490.22348588059988134No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA449190.21895269843761195No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA434440.21176297404046426No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA421930.20566511287379866No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA389670.1899403325990878No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA389350.18978435213759035No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA378150.1843250359851799No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA375580.18307231790377856No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA354330.17271424038246408No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA343570.1674693973646126No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA337340.1644326527548343No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA322360.1571308174009853No Hit
CCCTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA319720.15584397859363142No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA318940.1554637762187314No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA318070.15503970433903524No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA317990.15500070922366088No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA312620.15238316210415692No Hit
GGGCTAAACCATTCGTAGACGACCTGCTCAAAAAAAAAACAAAAAAAAAA309240.1507356184795902No Hit
GGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAAA286930.13986085567956544No Hit
CCCCTAAACCATTCGTAGACGACCTGCTTAAAAAAAAAAAAAAAAAAAAA259090.12629055552928803No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA257900.1257105031880944No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA252840.12324406214066609No Hit
GGGCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA251930.12280049270328275No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA250740.12222044036208915No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATAAAAAAAAAACAAA245410.11962239080027237No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCAAAAAAAAAACAAA229610.1119208555138362No Hit
CCCTGGATAACTGTGGTAATTCTAGAGCTAATACATAAAAAAAAAACAAA223730.1090547145338207No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA221890.10815782688021042No Hit
CCCCTAAACCATTCGTAGACGACCTGCAAAAAAAAAACAAAAAAAAAAGA212990.10381962029481283No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA212060.1033663020785859No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA210150.10243529369902303No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA208090.10143116947813324No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)