FastQCFastQC Report
Tue 19 Sept 2023
SRR18113787_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113787_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22320707
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA5238552.3469462683238485No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA3873001.7351600914791814No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA3633711.627954705915005No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA3577781.602897255897853No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA2216900.9932033066873733No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA1608330.7205551329534499No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA1532220.686456750675505No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA1270960.5694084869265118No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA850760.3811528012979159No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT848790.380270212767006No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA810700.3632053411211392No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA771500.3456431733994806No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA714780.320231791940999No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAA621720.27853956418136755No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA553010.24775648907536846No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA537520.2408167447384171No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA536370.24030152808331745No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA511660.22923109021591473No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA474560.21260975290791642No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA420720.1884886531595975No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAA405760.18178635649847472No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA387450.17358321132032242No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAAAAAAAAAACAAAAAAAAAA386740.17326512103760872No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA376580.16871329389342374No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAACAA358590.16065351334973396No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA347120.15551478723321802No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA335410.1502685376408552No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAACAAAAAA322230.14436370675893018No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAACAA311730.13965955469062874No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA296760.13295277788467902No Hit
GGGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA293820.13163561530555462No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA291230.1304752577953736No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAACAAAAAA290370.13008996534025558No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA275670.12350415244463359No Hit
CCCCCCCTTGTAAATTTAACTGTTAGTCCAAAAAAAAAACAAAAAAAAAA275050.12322638346536245No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAACAAAAA259300.11617015536291032No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAACAAAAAAAAA257580.11539957045267428No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA256320.11483507220447813No Hit
CCCCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAAA252700.11321325977712085No Hit
CCCCAACTTCTTAGAGGGACAAGTGGCGTTAAAAAAAAAACAAAAAAAAA251760.11279212616338721No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAAAA251190.11253675790825085No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACAAAAAAAAAACAAAAA247610.1109328660602014No Hit
GGGGGAATAATGGAATAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA243500.10909152653632342No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAAA241860.10835678278470302No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA240720.10784604627443029No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAA233400.10456658026110016No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAC233100.10443217591629154No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA227870.10208906017179474No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)