FastQCFastQC Report
Tue 19 Sept 2023
SRR18113788_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113788_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33289106
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA22848196.863563713606487No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA7419252.2287321263598967No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA6582721.9774397065514464No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA5782371.7370157071806014No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA5103401.5330540868234792No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAA3574171.0736755742253938No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA3295910.9900866667912319No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA3037170.9123615395378896No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA2633210.7910125312467088No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA2337880.7022958201400783No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA2099220.6306026962694643No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA2041060.6131315151569405No Hit
GGGGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAA1880060.564767344608173No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA1808170.5431716910631365No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAA1790270.5377945565735529No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA1459720.438497807661161No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAACAAAAAAAA1392660.41835307923258735No Hit
CCCCTAAACCATTCGTAGACGACCTGCTTAAAAAAAAAACAAAAAAAAAA1336430.4014616673694992No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA1335340.4011342329229268No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA1276580.3834828126655008No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA1273800.3826477046274538No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA1248010.37490042538240587No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACAAAAAAAAAACAAAAAAAAAA1228940.36917182456026304No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA1143840.34360790584162876No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAGAAAAAAAAAACAA1087890.326800605579495No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA1050800.31565882243878823No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAACAAAA1045450.31405169006340994No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAACAAAAAA1043900.3135860722724125No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAGAAAAAAAAAACAAA976720.29340529601485843No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAACAAAAAA920070.2763877167503387No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAACAAAAAA814650.24471969899101526No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAAAAAAAACAAAAAAA811360.24373138767980132No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAAA786350.23621841932312632No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAACAAAA777570.2335809198360569No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA743630.22338539220608686No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAGAAAAAAAAAACA697170.20942887441915684No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAGAAAAAAAAAAC668650.20086150706480374No Hit
GGGGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAACAAAAAA658040.19767427818578245No Hit
GGGCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA645890.1940244355015121No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAGAAAAAAAA645730.1939763717295382No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAGAAAAAAAAA641880.1928198372164155No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACGAAAAAAAAAACAAAAAAAAA622050.18686293347739646No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA620470.1863883037291539No Hit
GGGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAA610950.18352850929670506No Hit
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAACAAAAAAAAAAGA601140.18058159927755343No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAAA593000.17813635487837973No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA591220.17760164541516976No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAACAAAA590950.17752053779996374No Hit
GGGCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA573670.17232965042677928No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA572000.17182798480680136No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAGAAAAAAA557650.16751726525788949No Hit
CCCCTAAACCATTCGTAGACGACCTGCTCAAAAAAAAAACAAAAAAAAAA539650.1621100909108223No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGTAAAAAAAAAACAAAAAAAA523370.15721960211247488No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAGAAAAAA513720.1543207558652972No Hit
GGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAAA494720.14861318294339293No Hit
GGGGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAAAAA494580.14857112714291576No Hit
CCCCTAAACCATTCGTAGACGACCTGCTTCAAAAAAAAAACAAAAAAAAA489470.14703609042549837No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACAAAAAAAAAACAAAAAAAAA488140.14663656032096506No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAACAAAAAAAAA484790.1456302250952609No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA481430.14462088588380836No Hit
GGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAACAAAAAAAAAAGATC464680.13958920975528752No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC458110.137615591118608No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAAA449010.1348819640875907No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGAAAAAAAAAACAAAAAAAA448330.1346776930567015No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAACAAAAA447180.13433223469563887No Hit
GGGCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA446830.1342270951944459No Hit
CCCCTGAGCGTCGCTAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC445230.1337464574747066No Hit
CCCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAA442290.13286328566468564No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCTAAAAAAAAAACAAAAAA440790.13241268780243004No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAA433040.13008459884744278No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAACAAAAAAAAAAGAT426260.12804789651004747No Hit
CCCCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAAAAAA425280.12775350590670714No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAAAA423560.1272368203579874No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA415720.1248816955312648No Hit
GGGGTGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAAAAAAAACAAAAA414180.12441908172601572No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAGAAAAA413620.12425085852410696No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAACAAAAAAAAA393090.11808367578270201No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAACAAAAAA392510.1179094446092965No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAAA391900.1177262014786459No Hit
GGGGAGCGTCGCTAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC389050.11687006554036027No Hit
GGGCAACTTCTTAGAGGGACAAGTGGCGTTAAAAAAAAAACAAAAAAAAA385200.11571353102723755No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAAAA375080.11267349744988646No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGAAAAAAAAAACAAAAAAAAA374080.11237309887504938No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA368260.11062477916949769No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAACAAAAAAA367790.11048359183932425No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTAAAAAAAAAACAAAAAAAA362810.10898760693663567No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAA362660.10894254715041012No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTAAAAAAAAAACAAAAAAAAAAGA360550.1083087061575039No Hit
CCCCAACTTCTTAGAGGGACAAGTGGCGTTAAAAAAAAAACAAAAAAAAA360200.10820356665631092No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAAA357780.10747660210520522No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAA352280.10582440994360137No Hit
GGGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAAAAAG341610.10261915715008987No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAGAAAA334280.10041723559653419No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)