FastQCFastQC Report
Tue 19 Sept 2023
SRR18113792_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113792_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10605017
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAA991760.9351800190419307No Hit
GGGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACA952060.897744906962431No Hit
CCCCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAG643770.6070428741415502No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA603320.5689005496172237No Hit
GGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAA549600.5182452795690945No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG513480.48418592822623485No Hit
GGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAA510370.4812533539550196No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAACAAAA497190.4688252739245963No Hit
CCCCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG424490.4002728142727164No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA396700.3740682358170666No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA395380.3728235419141714No Hit
GGGCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG338720.31939599908232114No Hit
GGGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAA282490.26637392471883825No Hit
CCCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGC273640.2580288178698818No Hit
CCCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGA269130.2537761137016565No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTC264430.24934424904740843TruSeq Adapter, Index 1 (100% over 50bp)
CCCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAA263050.24804297814892706No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA237650.22409205001745872No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA232600.21933015288895813No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAA226600.21367245333034357No Hit
GGGCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA209230.19729341310815435No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA206930.1951246282773521No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA200860.18940092222388705No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA199180.187816766347475No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAAAAAAA198400.18708126540485506No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAA186160.17553955830528137No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAA182500.17208836157452648No Hit
CCCCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACA167740.15817042066033463No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAA163420.15409687697813212No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAC158150.14912753086581568No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA157960.1489483703797929No Hit
GGGGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAA157910.1489012228834711No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA155550.14667586105708272No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA149670.14113131548964042No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACGAAAAAAAAAACAAAAAAAAA147900.13946229411984912No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAA146470.138113875725046No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACAAAAAAAAAACAAAAAAAAA138160.1302779618363648No Hit
GGGGGCGGGGCGCGGGACATGTGGCGTACAAAAAAAAAACAAAAAAAAAA134240.1265815981247366No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA126220.1190191397147218No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT124220.1171332398618503No Hit
GGGGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGC122830.11582253946410459No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCAAAAAAAAAACAAA121870.11491730753472626No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA113100.10664763667988462No Hit
CCCCCCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAA109040.10281925997855544No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA108600.1024043620109237No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA107580.10144255308595922No Hit
GGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAA106410.10033930167202938No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)