FastQCFastQC Report
Tue 19 Sept 2023
SRR18113803_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113803_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22991435
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGA4859352.113547936438069No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA3174021.3805227903347486No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA3034511.3198436722196765No Hit
CCCCCCCGCCACGCAGTTTTATCCGGCAAAAAAAAAACAAAAAAAAAAGA2805481.2202283154574736No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA2337261.016578565017799No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA2233980.9716574889736114No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA2221570.9662598267572251No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGAT2182810.9494013749033063No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA1483350.6451750401834423No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA1220260.5307454710852106No Hit
CCCCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAG1153930.5018955972082647No Hit
CCCCCCGCCACGCAGTTTTATCCGGCAAAAAAAAAACAAAAAAAAAAGAT1146260.4985595722928995No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAACAAAA1145660.4982986055459348No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA1075760.467895979524549No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA1022670.44480477186395717No Hit
CCCCCCCGCCACGCAGTTTTATCCGGAAAAAAAAAACAAAAAAAAAAGAT900070.39148056656750657No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA807050.3510220218964149No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA709030.30838875433395085No Hit
CCCCCCCCGCCACGCAGTTTTATCCGGCAAAAAAAAAACAAAAAAAAAAG702830.30569209794864916No Hit
CCCCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAA642620.279504084890743No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCCAAAAAAAAAACAAAAA639390.2780992139029164No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGAAAAAAAAAACAAAAAAAA619500.2694481662410372No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA589150.25624759829040683No Hit
GGGGGACCAAGGAGTCTAACACGTGCGCGAGTCGGGGAAAAAAAAAACAA568950.24746171780926246No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGAAAAAAAAAACAAAAAAAAA561760.244334466291469No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA560380.24373424277345018No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAA557540.2424990001711507No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA557000.24226413009888248No Hit
CCCCGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAAAA556390.24199881390613506No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAAA530060.23054672316016814No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAAA499870.21741574634206173No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA496040.21574990860727047No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA446220.19408096971763614No Hit
GGGGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAAA444820.1934720473080519No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA443040.19269784595872333No Hit
GGGGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAAAAG436880.19001858735655255No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAA426310.18542122316419135No Hit
GGGGGACCAAGGAGTCTAACACGTGCGCGAGTCGGGAAAAAAAAAACAAA412170.17927110682739028No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA402360.1750043005145177No Hit
CCCCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTAAAAAAAAAACAAA401020.17442147477962988No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAACAAAAAA379650.16512670914190436No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA370120.1609816873109486No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA365880.15913752229906483No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT354090.15400952572120877No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA353790.15387904234772645No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGATC353010.15353978557667236No Hit
CCCCCCGCCACGCAGTTTTATCCGGAAAAAAAAAACAAAAAAAAAAGATC352050.15312223878152886No Hit
GGGGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAAAAA350660.15251766581772733No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAGGAAAAAAAAAACAAAAAAA347780.15126502543229683No Hit
GGGGGAGTCTAACACGTGCGCGAGTCGGGGAAAAAAAAAACAAAAAAAAA346710.15079963473354316No Hit
CCCCCCCGCCACGCAGTTTTATCCGAAAAAAAAAACAAAAAAAAAAGATC334340.1454193703002879No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAA330510.14375353256549667No Hit
GGGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAAAAGA322840.14041750765013145No Hit
GGGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAAAA318660.13859943931294416No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAACAAAAAAAAA317640.1381557958431042No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA316230.13754252398773717No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAAAAAAA315850.13737724504799287No Hit
GGGGGAGTCTAACACGTGCGCGAGTCGGGAAAAAAAAAACAAAAAAAAAA314150.13663783926492626No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAAAAAAAAAACAAAAAAAAAA303490.13200133006052037No Hit
GGGGGAGCACGAGCGCACGTGTTAGGACCCAAAAAAAAAACAAAAAAAAA296650.12902630914512297No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAAAAACAAAA294290.1279998399403952No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA284970.12394615647087709No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC282350.12280660167579796No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAACAAAAAA281320.12235860876017525No Hit
CCCCAGGATAGCTGGCGCTCTCGCAGACCCAAAAAAAAAACAAAAAAAAA278370.12107552225426556No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAAAA277830.12084065218199735No Hit
GGGGGAGAAGAAACTAACCAGGATTCCCTCAGTAACGAAAAAAAAAACAA277150.1205448898687707No Hit
GGGCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAA274600.1194357811941708No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCAAAAAAAAAACAAAAAA269730.1173176010979741No Hit
GGGGGAGCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAAAAAAAAAG261880.11390328615851945No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAGAAAAAAAAAACAAAAAAAA257930.11218525507433529No Hit
CCCCCCCTTGTAAATTTAACTGTTAGTCCAAAAAAAAAACAAAAAAAAAA255750.11123707589369694No Hit
CCCCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAAAAAA252680.1099017960383943No Hit
GGGGGAGAAGAAACTAACCAGGATTCCCTCAGTAACAAAAAAAAAACAAA250060.10876224124331518No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAACAAAAA240450.10458242384609748No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAA232530.10113766278616364No Hit
CCCCTCCATCTAAGGCTAAATACCGGCACAAAAAAAAAACAAAAAAAAAA232040.10092453994280913No Hit
GGGGGAGCACGAGCGCACGTGTTAGGACCCGAAAAAAAAAACAAAAAAAA231470.10067662153319268No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)