FastQCFastQC Report
Tue 19 Sept 2023
SRR18113804_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113804_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24195870
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGA5186122.1433905869059475No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA3427481.416555800638704No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA3291011.3601536129926306No Hit
CCCCCCCGCCACGCAGTTTTATCCGGCAAAAAAAAAACAAAAAAAAAAGA2976651.2302306137369723No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA2585281.0684798686718022No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA2371090.9799564967079092No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA2356580.9739596055029226No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGAT2324510.9607052773882485No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA1589610.6569757566063961No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA1318800.5450516968391713No Hit
CCCCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAG1219170.5038752481311893No Hit
CCCCCCGCCACGCAGTTTTATCCGGCAAAAAAAAAACAAAAAAAAAAGAT1216470.5027593552122739No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAACAAAA1205470.4982131248018774No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA1146390.47379573456131147No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA1077890.44548511791475154No Hit
CCCCCCCGCCACGCAGTTTTATCCGGAAAAAAAAAACAAAAAAAAAAGAT1015820.4198319795899052No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA854080.35298586081013No Hit
CCCCCCCCGCCACGCAGTTTTATCCGGCAAAAAAAAAACAAAAAAAAAAG749630.309817336595047No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA747370.30888329289254735No Hit
CCCCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAA702010.29013629185476697No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCCAAAAAAAAAACAAAAA676750.27969649365780197No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGAAAAAAAAAACAAAAAAAA656050.27114131461278307No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA641740.26522708214253093No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA613950.25374165095117474No Hit
GGGGGACCAAGGAGTCTAACACGTGCGCGAGTCGGGGAAAAAAAAAACAA611820.2528613354262525No Hit
CCCCGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAAAA604540.24985255748191737No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGAAAAAAAAAACAAAAAAAAA596910.24669912675179692No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA595360.24605852155760466No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAA592470.2448641028406914No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAAA562450.23245702675704574No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA533180.22035992092865436No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAAA530830.2193886807955242No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA488400.2018526302216039No Hit
GGGGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAAA479090.19800486611971382No Hit
GGGGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAAAAG477610.19739319148267867No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA465050.19220222294135322No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAA458330.18942488945427463No Hit
GGGGGACCAAGGAGTCTAACACGTGCGCGAGTCGGGAAAAAAAAAACAAA441350.18240716287531716No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA432430.17872058330615928No Hit
CCCCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTAAAAAAAAAACAAA430510.17792705945270823No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAACAAAAAA412990.17068615428996767No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA401810.16606553101831015No Hit
CCCCCCGCCACGCAGTTTTATCCGGAAAAAAAAAACAAAAAAAAAAGATC400820.16565637028137448No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA391400.1617631438753804No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT381900.15783685397549252No Hit
GGGGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAAAAA375280.15510084985578118No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA373000.15415854027980808No Hit
GGGGGAGTCTAACACGTGCGCGAGTCGGGGAAAAAAAAAACAAAAAAAAA372330.15388163351844758No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGATC370930.15330302237530619No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAGGAAAAAAAAAACAAAAAAA369730.15280706996689933No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAA358130.14801286335229938No Hit
CCCCCCCGCCACGCAGTTTTATCCGAAAAAAAAAACAAAAAAAAAAGATC345660.14285909124160445No Hit
GGGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAAAAAGA344800.14250365868224618No Hit
GGGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAAAA339890.14047438674451468No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA336660.13913944817855278No Hit
GGGGGAGTCTAACACGTGCGCGAGTCGGGAAAAAAAAAACAAAAAAAAAA335630.1387137556946702No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAAAAAAA335350.13859803346604194No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAACAAAAAAAAA331360.13694899170808902No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAAAAAAAAAACAAAAAAAAAA327490.1353495451909768No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA318350.131572041013611No Hit
GGGGGAGCACGAGCGCACGTGTTAGGACCCAAAAAAAAAACAAAAAAAAA317140.13107195566846738No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAAAAACAAAA313030.1293733186696738No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC301280.12451711800402299No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAACAAAAAA299400.12374012589751887No Hit
GGGGGAGAAGAAACTAACCAGGATTCCCTCAGTAACGAAAAAAAAAACAA296590.1225787706744994No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAAAA295290.12204148889872526No Hit
CCCCAGGATAGCTGGCGCTCTCGCAGACCCAAAAAAAAAACAAAAAAAAA292880.12104545114517479No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCAAAAAAAAAACAAAAAA291720.12056603048371478No Hit
GGGCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAAAAA290600.12010314156920168No Hit
GGGGGAGCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAAAAAAAAAG285980.11819372479683517No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAGAAAAAAAAAACAAAAAAAA275920.11403599043969075No Hit
CCCCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAAAAAA268970.11116359940766751No Hit
GGGGGAGAAGAAACTAACCAGGATTCCCTCAGTAACAAAAAAAAAACAAA268490.11096521844430475No Hit
CCCCCCCTTGTAAATTTAACTGTTAGTCCAAAAAAAAAACAAAAAAAAAA267750.11065938112578717No Hit
CCCCCCCCGCCACGCAGTTTTATCCGGAAAAAAAAAACAAAAAAAAAAGA253810.10489806731479381No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAACAAAAA253510.10477407921269208No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAA251590.10398055535924106No Hit
CCCCTCCATCTAAGGCTAAATACCGGCACAAAAAAAAAACAAAAAAAAAA248420.10267041441369953No Hit
GGGGGAGCACGAGCGCACGTGTTAGGACCCGAAAAAAAAAACAAAAAAAA247090.10212073382771522No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAAAA244880.1012073548088992No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA243230.10052542024733974No Hit
CCCCAGGATAGCTGGCGCTCTCGCAGACCCGAAAAAAAAAACAAAAAAAA241990.10001293609198596No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)