FastQCFastQC Report
Tue 19 Sept 2023
SRR18113807_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113807_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10199056
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA2902022.845380984279329No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA2316922.271700439726971No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA1215691.191963256207241No Hit
CCCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAA1006740.9870913543371073No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA1006010.9863756018204038No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA806960.791210480656249No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA601900.5901526572655352No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA566100.5550513694600755No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA535360.5249113251265607No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA517080.5069880977219853No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA456170.44726688430772416No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA432440.4240000251003622No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA429300.42092130879563755No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA423220.41495997276610697No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA419180.41099882185174785No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA380880.3734463267973036No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA356980.3500127854970107No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA338930.3323150691593418No Hit
GGGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA323790.31747055805949104No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACAAAAAAAAAACAAAAA305660.2996944030898546No Hit
CCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAC277180.2717702501094219No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAACAA261050.2559550609389732No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT231260.22674647536007256No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG229000.22453058400699047No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAC220370.2160690165834956No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA220330.21602979726751181No Hit
GGGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAC219450.21516697231586923No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA216760.21252947331596178No Hit
GGGCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAA195140.19133143302674285No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGAAAAAAAAAACAAAA191140.1874095014283675No Hit
GGGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACA186400.18276201248429266No Hit
GGGGGGCCGATCGCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACA182270.1787126181089701No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA182220.17866359396399037No Hit
CCCCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACA182140.17858515533202288No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA171120.1677802337784987No Hit
CCCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAA168960.16566239071537603No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAA166300.16305430620245637No Hit
GGGGCAGTTAAAAAGCTCGTAGTTGGATCTTGGAAAAAAAAAACAAAAAA163860.1606619279274474No Hit
GGGTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAC157190.15412210698715648No Hit
GGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC154480.15146499832925714No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA151630.14867062206541468No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA151000.14805291783867056No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAA148250.14535658986478747No Hit
GGGGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAACA146800.1439348896603764No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAACAA143710.14090519750063144No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAACAAAA143330.14053261399878575No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCAAAAAAAAAACA143010.14021885947091572No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAAAA142720.13993451943003354No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAA139440.13671853551936572No Hit
GGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAA139280.1365616582554307No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC133450.13084544295079859No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAACAAAAAA129960.12742355763121607No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACGAAAAAAAAAACAAAAAAAA129050.12653131819258567No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA128340.12583517533387403No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA123890.12147202643068143No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA122780.12038369041213225No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA120920.1185599922188877No Hit
CCCTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA120850.11849135841591615No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAAAAAAAAAACAAAAAAAAAAG120680.1183246763229852No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA120370.11802072662411109No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAAA120190.1178442397021842No Hit
GGGCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA119950.11760892380628168No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAA119590.11725594996242789No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA119500.11716770650146446No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAA114370.11213782922654802No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACAAAAAAAAAACAAAAAAAAA113650.11143188153884045No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCAAAAAAAAAACAAAA112580.11038276483627503No Hit
GGGGCAGTTAAAAAGCTCGTAGTTGGATCTTGAAAAAAAAAACAAAAAAA110710.10854926181403456No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAAAA110400.10824531211516045No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA109920.10777468032335542No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA109890.1077452658363676No Hit
CCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAC109730.10758838857243258No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAA106630.10454889158369167No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA104110.10207807467671517No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCAAAAAAAAAACAAA102360.10036222960242595No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)