FastQCFastQC Report
Tue 19 Sept 2023
SRR18113808_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113808_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58837381
Total Bases8.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA16604842.822158246642555No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA13389302.2756451379098603No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA7283141.2378423166048127No Hit
CCCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAA5738940.9753901180611693No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA5684880.9662020816324234No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA4616620.7846406351771504No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA3441180.5848628782440197No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA3236900.550143453869913No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA3135060.5328347296763599No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA2982960.506983816971731No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA2625720.44626731431162786No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA2507200.4261236576794606No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA2489140.4230541804707453No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA2465420.41902272978465843No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA2461130.41829360147760486No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA2169920.36879955618690774No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA2052140.34878166993870785No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA2029900.34500176002055566No Hit
GGGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA1911470.3248733997864385No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACAAAAAAAAAACAAAAA1748450.29716652411840017No Hit
CCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAC1571850.26715159194458366No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAACAA1488060.2529106453599626No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT1353460.2300340322761817No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG1328260.2257510408221603No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAC1287200.2187724841117588No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA1259280.21402720151666846No Hit
GGGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAC1244130.2114523078449056No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA1242150.21111578708780393No Hit
GGGCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAA1112690.18911276829266074No Hit
GGGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACA1064070.18084931414605285No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGAAAAAAAAAACAAAA1062430.18057057978158478No Hit
CCCCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACA1055630.17941485192891235No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA1053080.17898145398416018No Hit
GGGGGGCCGATCGCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACA1052640.1789066715936931No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACGGAAGAAAAAAAAAACAAAA988260.1679646481885385No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA976620.16598631404072864No Hit
CCCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAA963240.16371224953061728No Hit
GGGGCAGTTAAAAAGCTCGTAGTTGGATCTTGGAAAAAAAAAACAAAAAA941140.15995613400943187No Hit
GGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC906090.1539990367688188No Hit
GGGTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAC893190.15180655304830784No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA882890.15005596527146578No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA874290.1485943094577918No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACGGAAAAAAAAAACAAAAAAA870310.14791786874402177No Hit
GGGGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAACA842390.1431725861489314No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCAAAAAAAAAACA840390.14283266619226304No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAACAA831580.1413353187831389No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAAAA829420.14096820522993708No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAACAAAA812860.138153667988723No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAA805390.13688406695056668No Hit
GGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAA801930.13629600542553041No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC782990.13307696343588102No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA760290.12921887192769507No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAACAAAAAA754930.12830788644382388No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACGAAAAAAAAAACAAAAAAAA747610.12706377940241764No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA742290.12615959231767981No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAAAAAAAAAACAAAAAAAAAAG709710.12062229622355215No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA706330.12004783149678264No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAAA694000.11795222496392217No Hit
CCCTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA688720.1170548362783177No Hit
GGGGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAAAA688060.11694266269261712No Hit
GGGCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA685020.11642598435848123No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA674840.11469579177903924No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAA671600.1141451214492365No Hit
CCCCGGCGGGGCGCGGGACATGTGGCGTACAAAAAAAAAACAAAAAAAAA657720.11178607694995807No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCAAAAAAAAAACAAAA653700.11110283783705464No Hit
GGGGCAGTTAAAAAGCTCGTAGTTGGATCTTGAAAAAAAAAACAAAAAAA640450.10885086812412674No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA637940.10842426857850794No Hit
CCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAC635080.10793818304047217No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA633950.10774612826495455No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAAAA633220.10762205748077058No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA627980.10673146719429949No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAA622050.10572360452277779No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA602360.10237709254937775No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCAAAAAAAAAACAAA593940.10094602953180393No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAACAA592330.1006723939666859No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)