FastQCFastQC Report
Tue 19 Sept 2023
SRR18113809_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113809_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10118344
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA4042473.995189331376755No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA3222803.185106179430152No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA3062983.0271554317583984No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA1648771.6294860107543288No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA1229981.2155941723270132No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA1014321.0024565284595979No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA990480.9788953607428251No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA908250.897627121592229No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA855620.8456126812846054No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA766360.7573966649088033No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAA622000.6147250973084133No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT620410.6131536939246185No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA576040.5693026447806083No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA546820.5404244014633224No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA534520.5282682620792494No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA515450.5094213045138611No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA474640.4690886176631275No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA457390.4520403734049761No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAA394840.39022195726889697No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA341300.3373081603076551No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA326860.3230370503315562No Hit
CCCCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAAA308680.30506968333948714No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAACAA295270.2918165264988026No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACAAAAAAAAAACAAAAA284720.2813899191409187No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA283610.28029290168430726No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAAAAAAAAAACAAAAAAAAAA282970.27966038711472946No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA267840.26470734736830454No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA256400.25340114943710157No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA225780.22313928049886425No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA225560.22292185361557187No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA216620.21408641572178214No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAA214800.2122877024145453No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAACAA211500.20902629916515983No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAACAAAA206280.203867352207041No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA204840.20244419442549097No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA199520.1971864170658756No Hit
CCCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA194810.19253150515538905No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA193610.1913455403374307No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA188640.1864336693830532No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAACAAAAAA186110.183933260225191No Hit
CCCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAA181790.17966378688054094No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAAA181400.17927834831470446No Hit
CCCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAA180440.17832957646033779No Hit
GGGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAC178980.17688665259848846No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAACAAAAAA172360.1703440800194182No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA171300.169296477763555No Hit
CCCCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGATC169970.16798203342365114No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAACAAAAAA169270.16729022061317544No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA168260.1662920335580605No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA154980.15316735623932137No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAGAAAAAAAAAACAA153700.1519023271001658No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAACAAAA152750.15096343828594877No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA151170.1494019179423036No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACATAAAAAAAAAACA146660.14494466683481014No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAAAA135820.13423145131258632No Hit
GGGGGAATAATGGAATAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA133900.13233390760385297No Hit
CCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAAA133660.1320967146402613No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAGAAAAAAAAAACAAA133150.131592679592629No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA130050.1285289371462366No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA129510.12799525297815534No Hit
GGGCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA128760.12725402496693133No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC128170.12667092559810184No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAGAAAAAAAAAACA128100.12660174431705426No Hit
CCCCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAAA126700.12521811869610286No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAACAA123880.12243110137390072No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAGAAAAAAAAAACAAA120760.11934759284720899No Hit
GGGTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAA118830.11744016609832597No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAACAAAAAA115330.11398110204594743No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAACAAAAAAAAA113050.11172776889182656No Hit
GGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAAA110870.10957326613920222No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAACAAAA109150.1078733832334619No Hit
GGGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCAAAAAAAAAACA108140.10687519617834697No Hit
GGGGCAGTTAAAAAGCTCGTAGTTGGATCTTGGAAAAAAAAAACAAAAAA107180.10592642432398029No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAC104470.10324812044342434No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA103860.10264525499429551No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAACAAAA103810.10259583979354725No Hit
GGGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAACAAAA103790.10257607371324794No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA102720.10151858841723509No Hit
GGGCAACTTCTTAGAGGGACAAGTGGCGTTAAAAAAAAAACAAAAAAAAA102370.10117268201199722No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)