FastQCFastQC Report
Tue 19 Sept 2023
SRR18113898_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18113898_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71098894
Total Bases10.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA23221273.2660522117263877No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA21444523.0161538096499787No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA18158232.5539398686004877No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA10773181.5152387602541328No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA9171561.2899722462630712No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA6455110.9079058248079077No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA5172580.7275190525467246No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA4868320.6847251379184605No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA3936210.5536246456942072No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA3634390.5111739150260199No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA3501330.4924591372687176No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA3301020.4642857032347085No Hit
CCCCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAAA3113470.43790695253290435No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA3054480.42961005835055605No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA2991020.4206844624052802No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAA2668690.3753490173841523No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA2644560.37195515305765514No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA2578780.3627032510519784No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACAAAAAAAAAACAAAAA2476120.3482642078792393No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT2470650.3474948569523459No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA2396810.3371093226851039No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA2355170.331252691497564No Hit
CCCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAA2319120.3261822891365933No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAC2184200.30720590393431435No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAA1989340.2797990078439195No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAAA1914610.2692882958207479No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA1590180.22365748755529163No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA1565810.22022986742944273No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGAAAAAAAAAACAAAAAAAA1518910.21363342163944213No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAACAA1472310.20707917059863126No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA1407340.19794119441576685No Hit
CCCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA1385970.1949355217818156No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA1355910.19070760791300073No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA1258810.17705057409191205No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAACAAAAAAAAA1238380.17417711167208874No Hit
CCCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAA1231400.17319538050760677No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAA1229360.17290845621311635No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAACAAAAAA1204290.16938238167249128No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA1197290.16839783752472998No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA1135360.1596874348003219No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA1098060.15444122098439395No Hit
CCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAC1083690.15242009249820399No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAAAAAAAAAACAAAAAA1076500.15140882500928918No Hit
CCCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAA1063160.1495325651619841No Hit
GGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAAA1040260.14631169930716503No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA1033630.14537919535007113No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAAAAAAAAAACAAAAAAAAAA1023590.1439670777438535No Hit
CCCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAA990570.13932284234969955No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA988030.13896559347322618No Hit
GGGCACTCGCCGAATCCCGGGGCCGAGGGAGCAAAAAAAAAACAAAAAAA950780.1337264121154965No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAACAAAAAA946410.1331117752689655No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAACAAAA928160.13054492802658788No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA920660.12949005929684365No Hit
GGGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAC913000.12841268670086484No Hit
CCCCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAACAAA912510.12834376861052157No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA899040.12644922437190093No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAACAA893950.1257333201273145No Hit
GGGGGAATAATGGAATAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA889070.12504695220716092No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAA871380.12255886849660419No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAACAAAA863060.12138866745240791No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCAAAAAAAAAACAAAAAAAA839330.11805106279149716No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA801930.11279078405917256No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA801580.11274155685178451No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAACAAAAAA801330.11270639456079302No Hit
GGGCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAA793450.11159807914874174No Hit
CCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAAA793220.1115657298410296No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA788890.11095671896105726No Hit
CCCCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAACAAAAAA777680.10938004183299954No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAAAAAAAAAACAAAAAAAAAA777540.10936035095004432No Hit
CCCCGACTGCATAATTTGTGGTAGTGGGGAAAAAAAAAACAAAAAAAAAA771200.10846863525050053No Hit
GGGCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA769810.10827313291258793No Hit
CCCCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGATC754360.1061001033293148No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAACAA744130.10466126238194366No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA731130.10283282325038699No Hit
CCCCACTCGCCGAATCCCGGGGCCGAGGGAGCGAGAAAAAAAAAACAAAA725020.10197345685855534No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGAAAAAAAAAAC723530.10176388960424615No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)