FastQCFastQC Report
Thu 21 Sept 2023
SRR18360995_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18360995_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123931179
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length15-42
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCT65457435.281756417406471No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACG37593323.0334029179210824No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT34298062.767508570220251No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGT28579602.306086348133588No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC26159902.110840888554768No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG22820901.8414171626657403No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCG14587151.1770363291710475No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCC14447571.1657736266674263No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGT13329961.075593737391944No Hit
TGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAG12303460.9927655089926968No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC11591580.9353239510454427No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTG11184030.9024387640175682No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCA11068730.8931352133751588No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT10286970.8300550420810568No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC9815640.7920234503699832No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACA7534950.6079947000262137No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC7395620.5967521700088079No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCC7166000.5782241448699524No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCC7003810.5651370427130367No Hit
CCATTAATGCGGTACGTGAGCTGGGT6895470.5563950940868561No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACG6738000.5436888484696817No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGC6619740.5341464555904853No Hit
GCGAGCGTAGTTCAATGGTAAAACATCTCCTTG6161600.49717916425212094No Hit
GACTCGGAATCGTCTGTAGACGACTTAGGT6082870.490826444893258No Hit
CCATTAATGCGGTACGTGAGCTGGG5853210.47229519215660815No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGC5606350.4523760723683586No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA5008460.4041323612357468No Hit
GCTTGACTGCAAGACTCACCCGTCGAGCAGAGACG4828770.38963318504377337No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC4828530.3896138194570069No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGC4512310.3640980450932368No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGG4411060.35592818817611666No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGC4399260.3549760468267634No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACA4318690.34847485796935734No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAAC4315220.3481948638606916No Hit
GCCCTTTTAACTCAGTGGTAGAGTAATGCCATG4121920.33259749751916745No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCG3890140.3138951820994134No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCTT3824420.30859223892318494No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTT3800910.30669521831951585No Hit
GCCAAGGATGTTTTCATTAATCAAGAAC3763030.3036386832082022No Hit
CGGGCTGAATCCTTTGCAGACGACTTAAATA3687890.2975756407513883No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGACTG3530680.28489037451987764No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGC3471150.2800869021023354No Hit
CGGGCTGAATCCTTTGCAGACGACTTAAAT3367410.27171612722251276No Hit
GACTTGAGAGGTGTAGGATAAGTGGGAGCCCT3319230.2678284856791365No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCT3273100.2641062585227241No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTA3217900.2596521735664275No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC3214930.259412524430192No Hit
GCGCCGTCCGAATTGTAGTCTG3200080.2582142787490144No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCCT3181950.2567513700486945No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGTC3074390.24807235957950502No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGT2923010.2358575157265308No Hit
TGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGT2919590.23558155611510803No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCT2895440.2336328939467283No Hit
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTC2842430.2293555199696761No Hit
GCTAATACCCCGTAGGCTGAGGAGCAAAAGGAG2815630.22719302944741612No Hit
TGTCCGATGCACTGAACTCCAGGACCGAG2780860.22438744006461844No Hit
GCCCACGGGTCGTCAACTTCTTTTCTCGGAGA2772840.22374030670683767No Hit
TGTCCGATGCACTGATCTCCACGGCCCGG2687020.21681549563891422No Hit
TCTTTTGTTACGGACGATCTCGCATCAG2649300.21377187091877825No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGC2618720.21130437240494582No Hit
GCTCCGCGCCCCCGGCAGCCGTCGTCGGCGCAGCCGG2494860.201310115834531No Hit
ACCGTGTGCCGGATTATGACTGAACGCCT2492440.20111484616796874No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG2487260.20069687225359165No Hit
CCATTAATGCGGTACGTGAGCTGGGTT2475470.199745537803687No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG2371240.19133522485088275No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT2360250.19044844235686648No Hit
TGGGACTCGGAATCGTCTGTAGACGACTTAGGT2358230.19028544866824837No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGG2293540.18506561613522615No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATACCTGG2202440.17771476215843957No Hit
GCGAGCGTAGTTCAATGGTAAAACATCTCCTT2026940.16355367683543137No Hit
GCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGA1957820.1579763878466774No Hit
GCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGA1955340.15777627678342349No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTT1940230.15655705171658216No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGA1926670.15546289606427452No Hit
GAGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTG1916150.15461403784434263No Hit
TGCTAATACCCCGTAGGCTGAGGAGCAAAAGG1844070.1487979066188017No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTA1812800.14627473204301558No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG1802810.14546863949385974No Hit
CTGGAAACGGTTGCTAATACCCCGTAGGCTG1779590.14359501897420018No Hit
AGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTG1708020.1378200396205381No Hit
ATTGGTGTATTTTCTTTGTGGTAACACTT1689100.13629338586377848No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGT1675440.1351911612169848No Hit
AACTCTACTGCGGTGACGATACTGTAGG1649230.1330762777621925No Hit
ACTCTACTGCGGTGACGATACTGTAGG1592460.12849550959246503No Hit
TGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAA1552650.12528324288757067No Hit
AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTA1524640.1230231175320296No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATACCTGGCT1521330.12275603381454155No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACGA1498590.12092114446841501No Hit
TTCCGATCCATTGAGCTCCAATACCACT1492950.1204660531794021No Hit
TCCATTGTCGTCTAGTCCGGTCAGGATACCTGGCT1487460.12002306538211825No Hit
TCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTG1474750.11899749618294198No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCA1469100.11854159799448048No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCT1462070.11797434768211154No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCG1424810.11496784033661134No Hit
TAATACCCCGTAGGCTGAGGAGCAAAAGGAG1420240.1145990872885991No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGT1390000.11215902335601922No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGGC1388670.11205170572935483No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCA1351940.10908796405463067No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTT1337470.10792038055250004No Hit
CTGGAAACGGTTGCTAATACCCCGTAGGCT1311430.10581921438833403No Hit
AAAAGGACTTTGAAAAGAGAGTCAAAGAGT1308610.10559166874382757No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT1293650.10438454716871531No Hit
GACTTGAGAGGTGTAGGATAAGTGGGAGCCC1284060.10361073059750364No Hit
AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTA1270830.10254320262699994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)