FastQCFastQC Report
Thu 21 Sept 2023
SRR18360996_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18360996_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128877512
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length15-42
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCT54267564.210785819639349No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACG42891033.3280460907718328No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT36301162.8167179391234676No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGT35991192.792666419568994No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG27682582.1479759789279607No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC26073512.0231233203819143No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTG13635161.0579937328399076No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGT13175971.0223637774757786No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCG11891280.922680754420523No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCC11504790.8926918142243466No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC11444580.8880199363252761No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC11268000.8743185545046834No Hit
TGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAG9943110.7715162906000234No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCA8552770.6636355611830869No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT8415610.6529928976282534No Hit
CCATTAATGCGGTACGTGAGCTGGG8092420.6279155978740496No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACA7776920.6034349887201423No Hit
CCATTAATGCGGTACGTGAGCTGGGT7534020.584587635428592No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC7518860.5834113247003092No Hit
GACTCGGAATCGTCTGTAGACGACTTAGGT7466180.5793237225125824No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCC7206530.5591766855337803No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGC6672250.5177202675979654No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGC6575670.5102263302537995No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACG6548400.5081103676178975No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCC6526070.506377714678415No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGC5758920.44685220180228186No Hit
GCTTGACTGCAAGACTCACCCGTCGAGCAGAGACG5452470.42307380980477033No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAAC5449910.42287517158152466No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC5276400.4094120004427149No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGG5194440.40305247357661594No Hit
GCGAGCGTAGTTCAATGGTAAAACATCTCCTTG4779020.3708187662716518No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGC4771310.3702205238102362No Hit
GCGCCGTCCGAATTGTAGTCTG4546290.3527605343591673No Hit
GCCAAGGATGTTTTCATTAATCAAGAAC4474940.34722426981675436No Hit
GCTCCGCGCCCCCGGCAGCCGTCGTCGGCGCAGCCGG4348500.33741340382176216No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA4288170.332732214755977No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCG3943430.30598278464593576No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGC3847760.2985594569826891No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACA3826210.2968873266268517No Hit
CGGGCTGAATCCTTTGCAGACGACTTAAATA3675090.2851614640108819No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTT3594610.27891677486759675No Hit
TGTCCGATGCACTGAACTCCAGGACCGAG3518180.2729863376009307No Hit
CGGGCTGAATCCTTTGCAGACGACTTAAAT3477280.26981278161235767No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTA3421520.2654861928122883No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC3415890.2650493439072598No Hit
GCCCTTTTAACTCAGTGGTAGAGTAATGCCATG3404240.2641453848053802No Hit
TGTCCGATGCACTGATCTCCACGGCCCGG3315600.2572675363254995No Hit
TCTTTTGTTACGGACGATCTCGCATCAG3248540.2520641459931349No Hit
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTC3248160.2520346606318719No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGACTG3194530.24787334504098746No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCTT3176200.24645106432532618No Hit
CCATTAATGCGGTACGTGAGCTGGGTT3176100.24644330501973066No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCCT3074170.23853424482620367No Hit
ACCGTGTGCCGGATTATGACTGAACGCCT3063250.23768692865517144No Hit
GCCCACGGGTCGTCAACTTCTTTTCTCGGAGA3024630.2346902848341765No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGTC2843460.22063275088674894No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCT2757820.2139876815747343No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG2705280.20991094241484118No Hit
TGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGT2620710.2033488976726987No Hit
GCTAATACCCCGTAGGCTGAGGAGCAAAAGGAG2539370.19703747850129197No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT2483660.19271476935402043No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGC2445500.18975381833876495No Hit
GACTTGAGAGGTGTAGGATAAGTGGGAGCCCT2427930.18839050834562976No Hit
TGGGACTCGGAATCGTCTGTAGACGACTTAGGT2325990.18048067222154318No Hit
ACTCTACTGCGGTGACGATACTGTAGG2259360.17531064690323941No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCT2217060.17202846063632887No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGT2171510.16849409693756345No Hit
AACTCTACTGCGGTGACGATACTGTAGG2129510.16523518858743952No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG2126840.16502801512803877No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGG2121810.16463772205658345No Hit
GCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGA2051910.15921396744530575No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATACCTGG2049750.15904636644444223No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGT2034390.15785453710496833No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTA2006310.1556757240937426No Hit
GAGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTG1979670.15360864508309255No Hit
GCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGA1924780.14934956224170434No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG1910970.14827800213896122No Hit
ACTCGGAATCGTCTGTAGACGACTTAGGA1890220.1466679462278881No Hit
AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTA1846720.14329264829383112No Hit
GCGAGCGTAGTTCAATGGTAAAACATCTCCTT1832490.14218849910758674No Hit
AGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTG1775640.13777733387652613No Hit
TGCTAATACCCCGTAGGCTGAGGAGCAAAAGG1766300.13705261473390332No Hit
ATTGGTGTATTTTCTTTGTGGTAACACTT1705550.13233883658461687No Hit
TTCCGATCCATTGAGCTCCAATACCACT1699700.13188491720727819No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTT1670380.12960988880666785No Hit
CTGGAAACGGTTGCTAATACCCCGTAGGCTG1669150.12951444934784279No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACGA1648930.12794551775642596No Hit
CTCGGAATCGTCTGTAGACGACTTAGGT1609740.12490464589353649No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCT1597100.1239238696662611No Hit
CCGGCCGCCTCGAAGCTCCCTTCCCAACGGGCGGCG1584800.12296947507801051No Hit
TAATACCCCGTAGGCTGAGGAGCAAAAGGAG1518430.1178196239542551No Hit
AAAAGGACTTTGAAAAGAGAGTCAAAGAGT1510400.1171965517149338No Hit
GCAGTTAAAAAGCTCGTAGTTGGACCTT1505640.11682720876858642No Hit
GCCGCGCCGTCCGAATTGTAGTCTG1440840.11179917874268087No Hit
AAACTCTACTGCGGTGACGATACTGTAGG1439380.1116858928809861No Hit
AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTA1418060.11003160892801842No Hit
GACTCGGAATCGTCTGTAGACGACTTAGGC1391640.10798160038967854No Hit
CCATTAATGCGGTACGTGAGCTGGGC1361480.10564139382206572No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGT1355070.10514402233339204No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAGCCGC1328240.10306220064211047No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCA1320970.1024980991253152No Hit
CTGGAAACGGTTGCTAATACCCCGTAGGCT1311620.10177260405213286No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT1311280.10174622241310805No Hit
GGCCCACGGGTCGTCAACTTCTTTTCTCGGAGA1301440.10098270674250757No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG1299980.10086942088081277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)