FastQCFastQC Report
Thu 21 Sept 2023
SRR18360997_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18360997_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124995914
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length15-42
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTTAGGATACT56561244.525047114740087No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG50598224.047989920694527No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACG37967633.0375096901167504No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGT23494241.879600640385733No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTG16356751.3085827749537478No Hit
GCGCCGTCCGAATTGTAGTCTG15997131.2798122345023213No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC14628461.1703150552585262No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGC13442821.0754607546611483No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC11891990.9513902990460952No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC11562320.9250158369176772No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACG11527660.922242946277428No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGC11325120.9060392166099126No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCT11203480.8963076985060489No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGC9382740.7506437370424764No Hit
TGGGCACTGTCTCGGAGAGAGACTCGG9170760.7336847826881765No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC8921700.7137593313650237No Hit
GCCAAGGATGTTTTCATTAATCAAGAAC8391880.6713723458192401No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACA8006780.6405633387344165No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTA7636240.6109191697258199No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACA7446300.5957234730088857No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAAC7348750.5879192179033949No Hit
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTC7303050.5842630983921603No Hit
TGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGT5991010.47929646724292124No Hit
TCATAGTCAAAATCTGAGTTTGATC5927660.47422830157472184No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG5873520.46989695999182823No Hit
AAGGACGCACCTCTGGTGTACCAGTTATCGTG5515840.4412816246137454No Hit
ACTCTACTGCGGTGACGATACTGTAGG5446070.4356998421564404No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG5411750.4329541524053338No Hit
GAAGGACGCACCTCTGGTGTACCAGTTATCGTG5101160.40810614017350993No Hit
AACTCTACTGCGGTGACGATACTGTAGG5094430.40756772257371554No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCC4654860.37240097304300684No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGC4065780.32527303252488715No Hit
CTCGGATTCTAACCTTGTG3900160.31202299940780465No Hit
CGCGCCGTCCGAATTGTAGTCTG3471750.2777490790618964No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGG3205240.2564275821048039No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC3063050.24505201026011136No Hit
CCATTAATGCGGTACGTGAGCTGGG3048100.2438559711639854No Hit
GAAGAGCTCGGATTCTAACCTTGTG3018250.24146789310248973No Hit
GGCTAGGCTTGCGACTGGAGTGAAGT2940080.2352140886781307No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTA2911360.23291641357172685No Hit
GGGATTGTAGTTCAATTGGTCAGAGCA2901170.23210118692359819No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCG2808400.2246793443184071No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT2784170.22274088095391664No Hit
AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTA2722390.21779831939146427No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGT2695330.2156334486261687No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAG2643820.21151251392105505No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGT2630440.21044207893067607No Hit
GCGCCGTCCGAATTGTAGTCTA2623430.20988126059864642No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC2546830.20375306028003445No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA2533550.202690625551168No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGC2482860.1986352929904573No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG2452720.19622401417057522No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAGC2401110.19209507920394903No Hit
AAGAGCTCGGATTCTAACCTTGTG2369030.1895285953107235No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC2341020.18728772206105873No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCC2322690.18582127412580862No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGT2267360.18139472943091564No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCA2198830.17591215021636628No Hit
AGAGCTCGGATTCTAACCTTGTG2100590.1680526933064388No Hit
CGAGGCAAACTCTGAATACTAGATA2084970.16680305245817875No Hit
CCATTAATGCGGTACGTGAGCTGGGT1979030.15832757541178505No Hit
GCTCGGATTCTAACCTTGTG1942090.15537227880904972No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT1905370.15243458278164196No Hit
GACCCGTGCAGTGCTGTAGCTAACGCGT1898860.15191376575717508No Hit
AAACTCTACTGCGGTGACGATACTGTAGG1897050.15176896102379794No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGT1871110.1496936931874429No Hit
TGCTAATACCCCGTAGGCTGAGGAGC1852080.14817124342160495No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCT1787520.14300627458910378No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA1774250.1419446398863886No Hit
TGACCGAAATCTTTGGAGATGATTCTG1774230.1419430398340861No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTT1742580.13941095706536455No Hit
AGGCCCACGGGTCGTCAACTTCTTTTCTCGGA1712490.13700367837623878No Hit
CGCCGTCCGAATTGTAGTCTG1660880.13287474340961258No Hit
GGGATTGTAGTTCAATTGGTCAGAGC1636420.13091787944364325No Hit
TGGAAGAGCTCGGATTCTAACCTTGTG1548920.12391765062016347No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCT1525410.12203678913856336No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGA1515110.12121276220277087No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1494850.1195919092203286No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG1488030.1190462913851728No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAGCCGC1486470.11892148730557706No Hit
ATGTCGGCTCTTCCTATCATTGTGAA1465540.11724703257100068No Hit
AGGATGTTTTCATTAATCAAGAAC1451410.1161165956192776No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGA1447790.11582698615252335No Hit
GGAATAAGCATCGGCTAACTCTGTGCCAGC1438530.11508616193646139No Hit
TGCTAATACCCCGTAGGCTGAGGAGCAAA1379630.11037400790557042No Hit
TGCCAAGGATGTTTTCATTAATCAAGAAC1363750.10910356637737774No Hit
TAAGCATCGGCTAACTCTGTGCCAGCAGCCGC1360620.10885315819203498No Hit
GGGCGACTGTTTACCAAAAACACA1357380.10859394971902842No Hit
GACCCGTGCAGTGCTGTAGCTAACGC1356440.10851874726081046No Hit
GGCCCACGGGTCGTCAACTTCTTTTCTCGGA1349400.10795552885032705No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGA1299860.10399219929701062No Hit
GACCCGTGCAGTGCTGTAGCTAACGCG1291370.10331297709459528No Hit
TGGGCACTGTCTCGGAGAGAGACTCGA1288710.10310017013836148No Hit
GTCCTGCGGCAAAATAGCTCGATGCCAGA1268740.10150251791430558No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCA1267210.10138011391316358No Hit
AGTAACGCGTAAGAACCTGCCCTTGGGA1257440.10059848836338763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)