FastQCFastQC Report
Thu 21 Sept 2023
SRR18361000_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18361000_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124663734
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length15-42
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGCCATGGTGAAATTGGTAGACACGCTG53779314.313949877355671No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT53289604.2746674024700715No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACG44959413.606454624566275No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGT21984471.7635016451536738No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC18321631.4696840381822671No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTG17821401.4295576931780336No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCT14942291.1986076078869898No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGC12585591.0095630538388976No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGC12067700.9680200979701122No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC11505610.92293160415041No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC11122940.8922354275061263No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACG10735890.8611879056983806No Hit
GCGCCGTCCGAATTGTAGTCTG10734910.8611092942234508No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGC10345300.8298564199913986No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACA9909140.7948695007001796No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC9732410.7806929640018644No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAAC8881900.7124686318155687No Hit
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTC8806990.7064596669308815No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTA8647770.6936877087285064No Hit
GCCAAGGATGTTTTCATTAATCAAGAAC8384210.6725460349198268No Hit
TGGGCACTGTCTCGGAGAGAGACTCGG8064770.6469219027243319No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACA7168090.5749940074793524No Hit
TGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGT6921470.5552111891658885No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG6111230.49021714687288287No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCC6028660.48359372903109094No Hit
GAAGGACGCACCTCTGGTGTACCAGTTATCGTG6014700.4824739165922946No Hit
AAGGACGCACCTCTGGTGTACCAGTTATCGTG5875590.471315097941796No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG5256830.4216807752605902No Hit
TCATAGTCAAAATCTGAGTTTGATC5227090.41929515764384206No Hit
AACTCTACTGCGGTGACGATACTGTAGG4508370.3616424645197937No Hit
ACTCTACTGCGGTGACGATACTGTAGG4480740.35942610222151694No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGT3952280.31703526544455984No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGC3941660.31618337374685085No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCG3607320.28936402626925967No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT3489530.27991540827743855No Hit
AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTA3435540.2755845577351309No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTA3333560.26740415139498386No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCC3168580.2541701502379192No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC3108410.24934356610880914No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC3032730.24327283506524838No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGG3002010.24080860597357046No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCA2916270.2339309040751178No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGT2878330.23088751697426294No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGT2781440.2231154090090066No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG2686010.21546041609823752No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC2684020.21530078667465555No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGC2669570.21414166849839425No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAGC2626800.2107108391282424No Hit
GGGATTGTAGTTCAATTGGTCAGAGCA2576400.20666796327470827No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAG2525880.20261546152628476No Hit
CGCGCCGTCCGAATTGTAGTCTG2446960.19628483132071115No Hit
CTCGGATTCTAACCTTGTG2377570.1907186576009347No Hit
GAAGAGCTCGGATTCTAACCTTGTG2366620.18984029469227995No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGT2352580.188714064990224No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCT2346640.18823758319320036No Hit
CCATTAATGCGGTACGTGAGCTGGG2331720.18704076359528907No Hit
GGCTAGGCTTGCGACTGGAGTGAAGT2327820.18672792201138463No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCT2266700.18182513288106708No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA2154020.1727864175799515No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA2063130.1654956043591635No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAGCCGC1994860.16001927232502117No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT1975960.15850319387994588No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTT1952540.15662454006070442No Hit
AGGCCCACGGGTCGTCAACTTCTTTTCTCGGA1943120.15586890731188913No Hit
GCGCCGTCCGAATTGTAGTCTA1840740.14765641465544424No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGA1826510.1465149439531468No Hit
AAACTCTACTGCGGTGACGATACTGTAGG1786050.14326941305961524No Hit
GACCCGTGCAGTGCTGTAGCTAACGCGT1750240.14039688559304664No Hit
TAAGCATCGGCTAACTCTGTGCCAGCAGCCGC1675940.13443685234071362No Hit
AAGAGCTCGGATTCTAACCTTGTG1661260.13325928453258107No Hit
CCATTAATGCGGTACGTGAGCTGGGT1583640.12703293485497555No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGA1530190.12274540083967002No Hit
GGAATAAGCATCGGCTAACTCTGTGCCAGC1522780.1221510018302516No Hit
CGAGGCAAACTCTGAATACTAGATA1513700.12142264245028953No Hit
TGCTAATACCCCGTAGGCTGAGGAGC1500480.12036218969664425No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGA1499630.12029400627451126No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG1473310.11818272666211009No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1463070.11736131696488412No Hit
GGCCCACGGGTCGTCAACTTCTTTTCTCGGA1441730.11564951199039168No Hit
TGGAAGAGCTCGGATTCTAACCTTGTG1433550.11499334682209983No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGA1430910.11478157713453375No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTT1430910.11478157713453375No Hit
TGACCGAAATCTTTGGAGATGATTCTG1428860.11461713476350707No Hit
TGCTAATACCCCGTAGGCTGAGGAGCAAA1423830.11421364933606112No Hit
TGCCAAGGATGTTTTCATTAATCAAGAAC1420270.1139280811210099No Hit
AGAGCTCGGATTCTAACCTTGTG1414560.11347004895585754No Hit
TGCCACGATCCACTGAGATCCAGCCCCGC1392560.11170530155947359No Hit
GGGATTGTAGTTCAATTGGTCAGAGC1368210.10975204705483954No Hit
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTT1345820.10795601550006517No Hit
GCCGCCATGGTGAAATTGGTAGACACGCGG1319480.10584313157184912No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCA1300420.10431421860025467No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCA1293660.10377195985482032No Hit
GTCCTGCGGCAAAATAGCTCGATGCCAGA1283070.1029224746308337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)