FastQCFastQC Report
Thu 21 Sept 2023
SRR18361001_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18361001_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125175276
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length15-42
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTTAGGATACT56404594.5060487823490005No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACG43305623.459598523273877No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG42948773.431090497455744No Hit
GCGCCGTCCGAATTGTAGTCTG18889041.5090072579508431No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGT18114441.447126028306101No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC17226041.3761535464878862No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTG17157901.3707099795010638No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC14651191.1704539800655203No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGC13062221.0435143757941463No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGC12375040.9886169533990083No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCT11550400.9227381292133121No Hit
TGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGT11546460.9224233705703991No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC11384860.9095134729321467No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGC10672610.8526132588675098No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC10217760.8162762109667727No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACG10175020.8128617986829922No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG9188230.7340291384698046No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAACA8446310.6747586480256692No Hit
GCCAAGGATGTTTTCATTAATCAAGAAC8194050.6546061060812041No Hit
TGGGCACTGTCTCGGAGAGAGACTCGG7681650.6136715049064482No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACA6621440.5289734691697424No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG6486520.5181949828494885No Hit
AAGGACGCACCTCTGGTGTACCAGTTATCGTG6350610.5073374074286043No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTA6331300.5057947705264098No Hit
GCAGTGATGTATGCAGCTGAGGCATCCTAAC6134520.4900744137364634No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT5576650.4455073060913403No Hit
GAAGGACGCACCTCTGGTGTACCAGTTATCGTG5427620.4336016003671524No Hit
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTC5261160.4203034471439871No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCC4673880.3733868339942786No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC4546060.3631755523351113No Hit
TCATAGTCAAAATCTGAGTTTGATC4295730.34317719419288517No Hit
ACTCTACTGCGGTGACGATACTGTAGG4232130.3380963186372363No Hit
AACTCTACTGCGGTGACGATACTGTAGG4091720.3268792473043958No Hit
CGCGCCGTCCGAATTGTAGTCTG3692810.2950111330291774No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGT3507260.28018791825951317No Hit
CTCGGATTCTAACCTTGTG3378700.2699175194948242No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA3170890.2533159982806828No Hit
AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTA3107990.24829104431133828No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGT3064170.2447903530086884No Hit
GGGATTGTAGTTCAATTGGTCAGAGCA3058440.24433259488079737No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGT2913250.23273365900147885No Hit
GCGCCGTCCGAATTGTAGTCTA2897730.23149379754513183No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGC2876200.22977380932637206No Hit
AGGACGCACCTCTGGTGTACCAGTTATCGTA2853650.2279723353675689No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA2795030.22328930195448501No Hit
GAAGAGCTCGGATTCTAACCTTGTG2777510.22188966453726852No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGC2729370.2180438571591406No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG2667330.2130876068529699No Hit
GGCTAGGCTTGCGACTGGAGTGAAGT2645800.21136761863421016No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAG2641510.21102489919814518No Hit
CCATTAATGCGGTACGTGAGCTGGG2544720.2032925415718676No Hit
AGCGTCTGTAGGTGGCTTTTCAAGTCCGT2468780.19722584833765416No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCG2445660.1953788382300032No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGG2386680.19066704514396277No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCC2125620.169811488971672No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC2106160.16825686887241215No Hit
AGGCCCACGGGTCGTCAACTTCTTTTCTCGGA2049180.1637048517472412No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG2012470.16077216398548225No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAGC2007900.16040707591489553No Hit
TGACCGAAATCTTTGGAGATGATTCTG1975480.15781710758920156No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCA1916620.15311490106081332No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCA1902760.15200765365198796No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT1854080.14811870676442526No Hit
CCATTAATGCGGTACGTGAGCTGGGT1852730.14801085799083838No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTT1849370.1477424343765777No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1844980.1473917261424692No Hit
TGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGC1839700.14696991760577383No Hit
CGCCGTCCGAATTGTAGTCTG1802870.14402764328636272No Hit
CGAGGCAAACTCTGAATACTAGATA1794410.14335179097188488No Hit
AAGAGCTCGGATTCTAACCTTGTG1777890.14203204153510315No Hit
TGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGG1742850.1392327667006702No Hit
ATGTCGGCTCTTCCTATCATTGTGAA1732240.1383851552282577No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCT1694460.13536698732743357No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACC1678410.13408478524145614No Hit
AGAGCTCGGATTCTAACCTTGTG1595900.12749322797578652No Hit
AAACTCTACTGCGGTGACGATACTGTAGG1581670.1263564220142003No Hit
GGCCCACGGGTCGTCAACTTCTTTTCTCGGA1571060.1255088105417878No Hit
GCTCGGATTCTAACCTTGTG1532140.12239957034326811No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGA1522020.12159110398126864No Hit
GGGATTGTAGTTCAATTGGTCAGAGC1521650.12156154542850778No Hit
AAGCGATCTGCCGAAGCTGTGGGATGTC1518710.12132667476602967No Hit
AAGCGTCTGTAGGTGGCTTTTCAAGTCCGA1516670.12116370328594282No Hit
TGCCAAGGATGTTTTCATTAATCAAGAAC1489370.11898276142007468No Hit
GACCCGTGCAGTGCTGTAGCTAACGCGT1487440.11882857761783565No Hit
TGGAAGAGCTCGGATTCTAACCTTGTG1438470.1149164632159469No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTG1437390.1148301841970774No Hit
GGAATAAGCATCGGCTAACTCTGTGCCAGC1437290.1148221953990339No Hit
CGTCTGTAGGTGGCTTTTCAAGTCCGA1433020.11448107372257761No Hit
TGCTAATACCCCGTAGGCTGAGGAGC1413510.11292245922429603No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTT1407380.11243274590423112No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCT1354200.10818430310471215No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT1300920.1039278715071497No Hit
ATAAGCATCGGCTAACTCTGTGCCAGCAGCCGC1266170.1011517641870428No Hit
TGGGCACTGTCTCGGAGAGAGACTCGGA1265750.10111821123526023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)