FastQCFastQC Report
Fri 30 Jun 2023
SRR1840411.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1840411.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57960236
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTGTAGGCACCATCAATA42188497.278867877625619No Hit
TCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCCTGTAGGCACCATCAAT22102473.8133850938771197No Hit
ACGGTACAGACCCGGGTTCGTTTCCCGGCTGGTGCCTGTAGGCACCATCA19331673.335333210168433No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATATTCGGCTGTAGGCACCATCAATA17485293.0167734306671905No Hit
TCCGTTGTAGTCTAGTTGGTTAGGATATTCGGCTGTAGGCACCATCAATA16651062.8728419946392214No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGCTGTAGGCACCATCAATAG15993722.7594297580154783No Hit
TCCCCGGCAACGGCGCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC14046042.423392478940217No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATATTCGGCCTGTAGGCACCATCAAT10191981.758443495640701No Hit
TCCGTTGTAGTCTAGTTGGTTAGGATATTCGGCCTGTAGGCACCATCAAT8769951.5130977037429594No Hit
TCCATTGTCGTCCAGCGGTTAGGATATCTGGCTGTAGGCACCATCAATAG8254291.4241298120318213No Hit
ACCTCAGGTCAGGCGGGGCTACCCGCTGAGCTGTAGGCACCATCAATAGA7656871.3210556975647925No Hit
ACGGTACTGACCGGGGTTCGTTTCCCCGGTTGCGCCTGTAGGCACCATCA7460261.28713416556827No Hit
TTCCCGGCTGGTGCCTGTAGGCACCATCAATAGATCGGAAGAGCACACGT6808641.174708812434787No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTCTGTAGGCACCATCA6350381.0956442620419973No Hit
ACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCCTGTAGGCACCATCA6145221.0602475807724454No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGCCTGTAGGCACCATCAATA5404190.932396134480888No Hit
TTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCCTGTAGGCACCATCA4700130.8109231991394927No Hit
ACGTCATCATCGCGATTGTGGATGGCAGCGCGCGCTGTAGGCACCATCAA4646410.8016547758708229No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCCTGTAGGCACCATCAA4510750.7782490740720931No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTCGGCTGTAGGCACCATCAATA3915590.6755648821029645No Hit
TCCATTGTCGTCCAGCGGTTAGGATATCTGGCCTGTAGGCACCATCAATA3538730.6105444429177272No Hit
AGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCCTGTAGGCACC3290180.5676615947526508No Hit
TCCCCGGCAACGGCGCCCTGTAGGCACCATCAATAGATCGGAAGAGCACA3210000.5538279726811326No Hit
TCCCCACAGACGGCGCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC3043460.5250944802916262No Hit
TCCCCGGCAACGGCGCCACTGTAGGCACCATCAATAGATCGGAAGAGCAC2880820.4970338630091154No Hit
TTGGGTCGATCGGTCCGCCTCCGGTGTGCACCGGTCGGCTCGCTGTAGGC2821310.48676647900467485No Hit
TCCGATGTCGTCCAGCGGTTAGGATATCTGGCTGTAGGCACCATCAATAG2789370.48125580441045823No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTGTAGGCACCATCAAT2412340.4162060347718391No Hit
TCCCCACAGACGGCGCTGTAGGCACCATCAATAGATCGGAAGAGCACACG2334080.4027036742914573No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTCGGCCTGTAGGCACCATCAAT2134750.3683128550408249No Hit
TTCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTGTAGGCACCATCAAT2047710.3532956629093091No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATC1783960.30779032714773624No Hit
ACGGTACAGACCCGGGTTCGGTTCCCGGCTGGTGCCTGTAGGCACCATCA1574960.2717311226959117No Hit
ACGGTACAGACCCGGGTTCGTTTCCCGGCTGGTGCTGTAGGCACCATCAA1524660.2630527591364535No Hit
TCCCCACAGACGGCGCCCTGTAGGCACCATCAATAGATCGGAAGAGCACA1483280.2559133817191497No Hit
GTCTAGTGGTAGAATAGTACCCTCTGTAGGCACCATCAATAGATCGGAAG1421480.24525089925444749No Hit
ACCTTGTGGTCGTGGGTTCGGGCCCCACGGTGGGCGCTGTAGGCACCATC1352420.23333583389826087No Hit
TTCTCGGAATGCCCCCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC1345320.23211085613937116No Hit
ACCTTGTGGTCGTGGGTTCGTGCCCCACGGTGGGCGCTGTAGGCACCATC1341920.23152424707173377No Hit
ACGGTACTGACCGGGGTTCGTTTCCCCGGATGCGCCTGTAGGCACCATCA1291790.2228752139656574No Hit
TTCCGTTGTAGTCTAGTTGGTCAGGATATTCGGCTGTAGGCACCATCAAT1237740.21354985511101093No Hit
ACGGTACTGACCGGGGTTCGATTCCCCGGTTGCGCCTGTAGGCACCATCA1227840.211841787531714No Hit
ACCACGTGGTCGTGGGTTCGTTTCCCACAGACGGCGCTGTAGGCACCATC1225270.21139838008941164No Hit
ACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGCGCCTGTAGGCACCAT1220900.21064441490541894No Hit
TCCCCGGCAACGGCGCTGTAGGCACCATCAATAGATCGGAAGAGCACACG1203500.20764235673574552No Hit
ACCTCAGGTCAGGCGGGGCTACCCGCTGAGTCTGTAGGCACCATCAATAG1200120.20705919830968253No Hit
ACTGAAGGTCTCCGGTTCGGGTCCGGGCGACGCCCTGTAGGCACCATCAA1128570.1947145280774909No Hit
TACCCCGCATCTCCCTGTAGGCACCATCAATAGATCGGAAGAGCACACGT1070900.1847646030978894No Hit
ACCCTGCTGTCGACGCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC1026890.1771714663135602No Hit
ACTGAAGGTCTCCGGTTCGTGTCCGGGCGACGCCCTGTAGGCACCATCAA1025220.17688333774210305No Hit
ATGAAAATCGGTCGCCCTCGGCGTCCGAATTGTAGTCTGTAGGCACCATC1017110.17548410258370928No Hit
TTCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCCTGTAGGCACCATCAA983790.16973533372086338No Hit
TCCACGCTCACCGCCTGTAGGCACCATCAATAGATCGGAAGAGCACACGT976210.16842754056418954No Hit
ATCTCGGTGGGACCCTGTAGGCACCATCAATAGATCGGAAGAGCACACGT957200.16514770574778198No Hit
GTCTAGTGGTATGATTCTCGCCTGTAGGCACCATCAATAGATCGGAAGAG947570.16348622182973857No Hit
TTCCGTTGTAGTCTAGTTGGTTAGGATATTCGGCTGTAGGCACCATCAAT947540.16348104586737708No Hit
GAGACCTCAGGTCAGGCGGGGCTACCCGCTGAGCTGTAGGCACCATCAAT882450.15225093286369643No Hit
TCCGATGTCGTCCAGCGGTTAGGATATCTGGCCTGTAGGCACCATCAATA870710.15022540625956043No Hit
TTGCGAGAGGCACGGGGTTCGTTTCCCCGCACCTCCCTGTAGGCACCATC869470.15001146648195152No Hit
TTCTCGGAATGCCCCCTGTAGGCACCATCAATAGATCGGAAGAGCACACG868720.14988206742291388No Hit
ACCACGTGGTCGTGGGTTCGATCCCCACAGACGGCGCTGTAGGCACCATC853520.14725957982641755No Hit
ACCCTGCTGTCGACGCCCTGTAGGCACCATCAATAGATCGGAAGAGCACA849940.14664191498461118No Hit
GTCTAGTGGTAGAATAGTACCCCTGTAGGCACCATCAATAGATCGGAAGA836790.14437311814948442No Hit
ACCCGGTTGGGCCCCTGTAGGCACCATCAATAGATCGGAAGAGCACACGT836610.14434206237531538No Hit
TCCCCACAGACGGCGCCACTGTAGGCACCATCAATAGATCGGAAGAGCAC833190.14375200266610372No Hit
ACCACGTGGTCGTGGGTTCGTTCCCCACAGACGGCGCTGTAGGCACCATC827980.14285311053598884No Hit
TCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTCTGTAGGCACCATCAA817650.14107085416284365No Hit
TTTGGGTCGATCGGTCCGCCTCCGGTGTGCACCGGTCGGCTCGCTGTAGG817280.14100701729371842No Hit
GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTGTAGGCACCATCAATAG810650.1398631296118256No Hit
ACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGCTGTAGGCACCATC806990.13923166220372188No Hit
TTGGCGTGCCTCGGCACCTGCGCGCTCCTGGCGTCGGCCCTGTAGGCACC801260.13824305339267426No Hit
TCGGTACAGACCCGGGTTCGTTTCCCGGCTGGTGCCTGTAGGCACCATCA796340.13739419556538726No Hit
CGGTACAGACCCGGGTTCGTTTCCCGGCTGGTGCCTGTAGGCACCATCAA774380.13360539111676495No Hit
TTGGCGTGCCTCGGCACCTGCGCGCTCCTGGCGTCGGCCTGTAGGCACCA767100.1323493575837062No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATATTCGGCTCTGTAGGCACCATCAA761280.13134522088557404No Hit
TCCCCAGTGGAGTCGCTGTAGGCACCATCAATAGATCGGAAGAGCACACG760650.1312365256759824No Hit
ACCCTGCTGTCGACGCTGTAGGCACCATCAATAGATCGGAAGAGCACACG758360.13084142721572078No Hit
TCCCCAGTGGAGTCGCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC756890.130587805060007No Hit
ACGTCATCATCGCGATTGTGGATGGCAGCGCGCGCCTGTAGGCACCATCA743020.1281947851282041No Hit
ATCCCAGCAGCCACCTGTAGGCACCATCAATAGATCGGAAGAGCACACGT737710.12727863979021756No Hit
TTCCGTTGTAGTCTAGTTGGTCAGGATATTCGGCCTGTAGGCACCATCAA733760.12659713807928594No Hit
CCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTGTAGGCACCATCAATAG717540.12379866776249841No Hit
ATCTCTCAGGCGACGCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC681810.11763409658994486No Hit
TGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCCTGTAGGCACCATCAA680660.11743568469942046No Hit
TTCCCACAGACGGCGCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC660860.11401954954082658No Hit
TGGGTCGATCGGTCCGCCTCCGGTGTGCACCGGTCGGCTCGCTGTAGGCA654200.11287048589657227No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGCTCTGTAGGCACCATCAAT649900.11212859795808976No Hit
ATCTCTCAGGCGACGCCCTGTAGGCACCATCAATAGATCGGAAGAGCACA644910.1112676628852926No Hit
TCCGTTGTAGTCTAGTTGGTTAGGATATTCGGCTCTGTAGGCACCATCAA610880.10539639624655772No Hit
ACCACGTGGTCGTGGGTTCGTTTCCCACAGACGGCGCCTGTAGGCACCAT604760.10434049992481052No Hit
TTCCCGGCTGGTGCACCCTGTAGGCACCATCAATAGATCGGAAGAGCACA602720.10398853448422812No Hit
TTGCGAGAGGTACGGGGATCGATACCCCGCATCTCCCTGTAGGCACCATC588530.10154030428723582No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)