FastQCFastQC Report
Thu 21 Sept 2023
SRR18584186_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584186_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32162698
Total Bases954.8 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATACT489176215.209426771348596No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGG391776212.181073863890399No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG30368029.442000170508082No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA17045105.299648679970816No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG15137754.706616963539564No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC9049792.813753373550938No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC6785082.109611575496558No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC6452492.0062029622017405No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC5720791.7787033911147627No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA5699581.7721087951017047No Hit
GCGGAGTAGAGCAGTTTGGTAGCTCACGAGG4651081.446110024724916No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGA2863670.8903699559035749No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGA2747180.8541509794980507No Hit
GGGGATGTAGTTCAGATGGTAGAAC2674320.8314974073381531No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA2514820.7819057965846024No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGA2184670.6792558261125979No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTG2089160.6495599343065063No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT1960020.6094078301515625No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG1948630.6058664605811366No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT1811070.5630964168491088No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1728600.537454911276411No Hit
GGAGAGATGGCTGAGTGGACTAAAGC1694880.526970716200488No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGA1610340.5006856079051577No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC1605930.4993144542786802No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT1542110.4794715915934665No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCA1482420.4609128251616205No Hit
GGAGAGATGGCTGAGTGGACTAAAGCG1460030.4539513445047427No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG1435580.4463493703171295No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA1406600.4373389322002774No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT1385530.430787864873774No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG1283020.3989155387399403No Hit
GTCAGGATAGCTCAGTTGGTAGAG1275540.3965898632011531No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC1249570.38851529184523015No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTT1197140.37221379873044236No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1138780.35406855482086735No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG1059230.3293349332820275No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTGG1057450.3287814971244017No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT1038770.32297352666122725No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC995990.30967240372682664No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC964400.29985046652491654No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAG953260.29638682675190997No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTCG888300.2761895161904639No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTCG701560.21812846671010003No Hit
CGCTGCAGCGCTGAAGTATGAGCCCCGTGG696630.21659563510499025No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAG687640.21380047158979015No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTGG683740.21258788675004814No Hit
GTCAGGATAGCTCAGTTGGTAGAGC635320.19753317958586683No Hit
GCGTCTGTAGTCCAACGGTTAGGATA620190.19282897224604725No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATA599300.1863338703736857No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTT540760.16813266100996874No Hit
TGTAGTCTAGCTGGTCAGGATATTCGG524890.16319837346978788No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC524710.16314240801564595No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG506360.15743704088506505No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACC504300.15679654735432955No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGT488330.15183116789518092No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTG435770.13548925528573505No Hit
GGGTGTATAGCTCAGTTGGTAGAGCATTGGG425590.13232409793481878No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACG404850.1258756339409088No Hit
GGGGATGTAGCTCAGATGGTAGAGCGCTCGC388830.12089470852227632No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCG379620.11803114278534717No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGT378520.117689131676702No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTC368230.11448977321492121No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTG355880.1106499212224049No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTA349710.10873154982209514No Hit
GCGGAGTAGAGCAGTTTGGTAGCTCACGAGA343400.10676964973523055No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGC338240.10516530671649499No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGA337240.10485438752681756No Hit
GGAGAGATGGCTGAGTGGACTAAAGT333250.1036138199600046No Hit
GGGGACGTAGCTCATATGGTAGAGT324450.10087773109084318No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT323230.10049840967943673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)