FastQCFastQC Report
Thu 21 Sept 2023
SRR18584187_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584187_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32118976
Total Bases937.8 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATACT931984629.01663490143646No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA26907388.377409043177467No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC16751915.215580347268854No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC13961724.346875815717163No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGG13222354.116678564098681No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG10330183.2162233316529143No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC9156932.8509408270051946No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG7196252.2404979536084837No Hit
GGGGATGTAGTTCAGATGGTAGAAC3578501.1141388816380695No Hit
GGAGAGATGGCTGAGTGGACTAAAGC3548011.1046460509824472No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGA3447461.0733405697616263No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTG3400501.058719929302852No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC3297221.0265644832512717No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA3119980.9713821511619798No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT3091970.9626614497299043No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT2786360.867512090049197No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT2340870.7288121514210166No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA2305980.7179494140784562No Hit
GGAGAGATGGCTGAGTGGACTAAAGCG2230350.6944025861845657No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1876740.5843087899190809No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG1762030.5485946999057505No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG1626370.5063579860080222No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC1450670.45165512125915847No Hit
GCGGAGTAGAGCAGTTTGGTAGCTCACGAGG1276300.3973663419406646No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT1267360.39458294062674976No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC1199940.37359223407371395No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGA1197910.37296020894314935No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT1181960.36799429720299925No Hit
CGCTGCAGCGCTGAAGTATGAGCCCCGTGG1116760.3476947708420094No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC1108070.34498920513530695No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTGG1104810.3439742288172574No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACC911170.283685880894833No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTC876190.2727951227336762No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA860160.26780430359921814No Hit
GCGTCTGTAGTCCAACGGTTAGGATA859410.26757079677758094No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG850920.2649274995566484No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC820460.2554440091738915No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCT793690.24710937235358937No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGT773140.24071128544073134No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTG744430.23177264430846115No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTGG714360.22241057747295553No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTCG660400.20561054001223453No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCT651780.20292676827555148No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTG639420.19907857585497124No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC607180.18904089594886211No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG605800.18861124339704977No Hit
GGGGATGTAGCTCAGATGGTAGAGCGCTCGC603690.18795431087217726No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT515380.1604596609804746No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT511960.15939486987380916No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTCG490120.15259515122773526No Hit
GTGGCTGTAGTTTAGTGGTGAGAATTCC481780.14999855537113013No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT473050.14728053596727367No Hit
GGAGAGATGGCTGAGTGGACTAAAGCGGC455950.1419565804339466No Hit
TCCGTCGTAGTCTAGCTGGTCAGGATACT448400.13960594509613258No Hit
GGGTGTATAGCTCAGTTGGTAGAGCATTGGG439030.13668866653781242No Hit
TCCGTTGTAGTCTAGCTGGTCGGGATACT433280.13489844757192757No Hit
TGGGGCGTGGCCAAGTGGTAAGGCAGCGGG425710.13254158538553656No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATA424570.1321866550166481No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCG423230.1317694561619897No Hit
TCCGTTGTAGCCTAGCTGGTCAGGATACT417370.12994498952893144No Hit
TCCGTTGTAGTCTAGCTGGCCAGGATACT414970.12919776769969255No Hit
CCCGTTGTAGTCTAGCTGGTCAGGATACT404200.12584460974098302No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTT403660.12567648482940427No Hit
TCCGTTGTAGTCTAGCTGGTCAGGGTACT389680.12132391767408775No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATA371850.11577268216770048No Hit
TCCGCTGTAGTCTAGCTGGTCAGGATACT371630.11570418683335358No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT369820.11514065703713593No Hit
GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTT352270.10967659741082654No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG334950.10428414654315256No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG328230.10219192542128366No Hit
TGTAGTCTAGCTGGTCAGGATATTCGG327020.10181520108237573No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACG323710.10078465764288376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)