FastQCFastQC Report
Thu 21 Sept 2023
SRR18584189_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584189_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32862611
Total Bases968.3 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATACT781543723.782154741143362No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA331500110.087454706505214No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGG25674277.8126080730469045No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG21316776.486633091935391No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC11402113.469629969450693No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG11367683.459153017391101No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC10942783.3298571437309104No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC7514262.2865681610021795No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC7270962.2125326560327174No Hit
GCGGAGTAGAGCAGTTTGGTAGCTCACGAGG3612901.099395297592148No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG3222660.9806463643439652No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT3023710.920106439503544No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT2965480.9023872144547492No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT2950900.8979505615059011No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA2888050.8788254834650844No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA2808280.854551697063876No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGA2628830.7999455673196509No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA2037370.6199659546224128No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT1883160.5730402858129562No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTGG1819260.5535956957284983No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC1685930.5130237521297379No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCA1652240.5027719799866176No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTG1627150.49513716362951193No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGA1538010.4680121126102853No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT1382330.42063912693973105No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC1334540.40609676449628423No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT1306230.39748211120534516No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG1172860.35689799571920805No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTCG1160070.35300603473047226No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTT1134850.34533165973939195No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTCG994560.30264180773706634No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC936760.2850534304775722No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATA828730.2521802056446458No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGA801570.24391549411579014No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTT767310.2334902725775502No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT713140.21700649409750186No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGA671760.20441467660618934No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG641850.19531314782017775No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAG599650.1824718066376406No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTC584900.17798342316744095No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTGG579320.1762854448783756No Hit
GGGGATGTAGTTCAGATGGTAGAAC576970.17557034649498787No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC544900.16581153579062843No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT471910.14360088429978982No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTG467920.14238673853395278No Hit
CGCTGCAGCGCTGAAGTATGAGCCCCGTGG451190.13729584663860092No Hit
GGAGAGATGGCTGAGTGGACTAAAGC450350.13704023700368786No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACG449660.13683027194643785No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAG441970.13449022659824567No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC426270.12971276080284674No Hit
GCGTCTGTAGTCCAACGGTTAGGATA406260.12362377414259627No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAC406090.12357204362124481No Hit
GTCAGGATAGCTCAGTTGGTAGAG402840.12258307777187881No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCT386120.11749522884837117No Hit
TCCGTTGTAGTCTAGCTGGTCGGGATACT374700.11402015500229119No Hit
TCCGTCGTAGTCTAGCTGGTCAGGATACT359570.10941613860201188No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATA344010.1046812744124318No Hit
TCCGTTGTAGCCTAGCTGGTCAGGATACT342930.10435263345325786No Hit
GGGTGTATAGCTCAGTTGGTAGAGCATTGGG336550.10241121741665626No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGT336540.10240817444481205No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTG336230.10231384231764178No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATG334240.10170829092064534No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT332560.10119707165081923No Hit
TCCGTTGTAGTCTAGCTGGTCAGGGTACT331100.10075279776156558No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG330190.10047588732374309No Hit
CCCGTTGTAGTCTAGCTGGTCAGGATACT328650.1000072696597358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)