FastQCFastQC Report
Thu 21 Sept 2023
SRR18584190_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584190_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49587404
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length20-50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATACT35650937.189513288495602No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC18010103.6319908983337785No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGG15529713.131785241268125No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC10476592.1127522626512167No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG9049821.8250239516470756No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG8633181.7410026142929362No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC7516571.5158224455549236No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA6553161.321537219411607No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT6258881.262191503309994No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT5685151.1464907499493218No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG5002741.0088731404451017No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC4304820.868127720499343No Hit
GCGCTCTTAGTTCAGTTTGGTAGAAC3760730.7584042915414568No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG3699250.7460059816803477No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC3360370.6776660459982943No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC3048150.6147024756528896No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC2827620.5702294881175873No Hit
GCGCTCTTAGTTCAGTTTGGTAGAACG2619800.5283196514985943No Hit
TGGACGTCATAATTTGTGGTAGAGGG2575410.5193677813825462No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA2306710.46518063337213617No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG2047640.4129355108002831No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA1957020.39466070859446484No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGA1716950.3462472042295257No Hit
GGAGAGATGGCTGAGTGGACTAAAGCGGC1661450.33505484578301375No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1547220.31201875379481453No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA1531820.3089131264060526No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA1409640.2842738046944341No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCT1393660.28105121211830325No Hit
TGGGGCGTGGCCAAGTGGTAAGGCAGCGGG1354500.27315404532973736No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT1296720.26150189269839574No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCA1276770.25747869358113606No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1261290.2543569330630819No Hit
ATGACACGGAGTCGACCCGCAACGCTGA1261200.2543387832926281No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT1260700.2542379512345514No Hit
ATTTGGTCTAGTGGTATGATTCTCGCTT1202650.24253134929184839No Hit
TGGGGCGTGGCCAAGTGGTAAGGCAGCGGGT1128590.22759610484952994No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGA1120560.22597674199681836No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC1077470.21728703523176976No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC1059340.21363086480590915No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCT1054900.21273547613018823No Hit
GCGGAGTAGAGCAGTTTGGTAGCTCACGAGG1031230.207962086500838No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG1030150.20774428925539237No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG1020690.2058365467165815No Hit
GTCAGGATAGCTCAGTTGGTAGAGC1004180.2025070721588894No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACC973320.19628371753439644No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT952820.19214960315325239No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT940740.1897135006301197No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC923690.18627512744970476No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGA909570.1834276301296192No Hit
GGAGAGATGGCTGAGTGGACTAAAGCG844450.17029526288571187No Hit
TCAGTGCACTACAGAACTTTGT829480.16727635106689595No Hit
GGGGATGTAGCTCAGATGGTAGAGCGCTCGC818310.16502376288946283No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCT799360.1612022278883565No Hit
GGAGAGATGGCTGAGTGGACTAAAGC799040.1611376953711874No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG783020.15790703623041044No Hit
GGGGATGTAGCTCAGATGGTAGAGCTCGCTT765030.15427909878081136No Hit
GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTT762420.15375275543765105No Hit
GTCAGGATAGCTCAGTTGGTAGAG732650.1477492146997653No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGC717690.1447323195221109No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCG680080.13714773211358272No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCT679600.13705093333782908No Hit
CCGTTGTAGTCTAGCTGGTCAGGATACT664510.13400782182507479No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGC662820.13366700946877558No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT641540.12937559707703192No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGA632100.1274718878205441No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTT629400.12692739470693No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT607110.12243230155787144No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAG596120.1202160129213459No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTCG590740.1191310599764408No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGT584640.11790090886790523No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTG546660.11024170573640031No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTA525020.10587769426284144No Hit
GCGTCTGTAGTCCAACGGTTAGGATA510510.10295154793745606No Hit
GGAGAGATGGCTGAGTGGACTAAAGCGG509450.10273778397433349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)