FastQCFastQC Report
Thu 21 Sept 2023
SRR18584191_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584191_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43621443
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length20-50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATACT532553412.208523225607186No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGG20995044.813009051534586No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG16734043.8361958819198163No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC11265932.5826587167233326No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA10237722.3469466610721703No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC9765792.2387590433448064No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC8454691.9381958547313531No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC7667131.7576516210158384No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG6989491.6023060034946575No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC5498291.2604557808873953No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG3626590.831377815722419No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT3501470.802694674726831No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC3112200.7134564530568143No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG2555750.5858930434740548No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT2390440.5479965438098873No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG2359140.540821173659936No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA2288200.524558529620398No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGA2120200.48604536076442956No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT1933930.44334388479537457No Hit
CGCTGCAGCGCTGAAGTATGAGCCCCGTGG1814750.4160224594129085No Hit
TGGACGTCATAATTTGTGGTAGAGGG1763740.4043286692739624No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC1741980.3993402969269036No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG1702170.39021405137835535No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC1616150.3704943919438887No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1580820.3623951642314996No Hit
GGAGAGATGGCTGAGTGGACTAAAGCG1570580.36004769489170724No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA1567550.35935308238198355No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA1502320.344399427593443No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCA1485850.34062376157524177No Hit
GGAGAGATGGCTGAGTGGACTAAAGC1473410.33777195311947844No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT1442430.33066994138639566No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC1407930.3227609870677593No Hit
ATGACACGGAGTCGACCCGCAACGCTGA1397810.3204410271342926No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGA1373530.31487495725439435No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG1283280.29418559124694704No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTCG1170240.26827173048814545No Hit
GCGGAGTAGAGCAGTTTGGTAGCTCACGAGG1099400.25203201095387884No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT1079080.24737375148272833No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTT993660.22779163907989014No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA922310.2114350045687393No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCC885480.20299190927727906No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT814350.1866857086777253No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTCG785060.1799711210837294No Hit
GGGGATGTAGCTCAGATGGTAGAGCGCTCGC748140.1715073937375249No Hit
GGAGAGATGGCTGAGTGGACTAAAGCGGC725770.16637918190831055No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACC701530.16082228183052083No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCT666110.1527024220633875No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC636000.145799853526166No Hit
GCCCGTCTAGCTCAGTTGGTAGAG607810.1393374354901556No Hit
CGCTGCAGCGCTGAAGTATGAGCCCCGTG604320.1385373702561834No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAG598690.13724672060940304No Hit
GGGATTGTAGTTCAATTGGTCAGAGC543800.12466345966592624No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGA527500.12092676530668645No Hit
GCGCTCTTAGTTCAGTTTGGTAGAACGCGGG515860.11825835289309433No Hit
GTGCTGTAGATGATCGTTCCTGGTCAGG515170.11810017380672162No Hit
GGGGATGTAGCTCAGATGGTAGAGCTCGCTT512840.11756603283389777No Hit
GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTT502440.11518188428567115No Hit
CCGTTGTAGTCTAGCTGGTCAGGATA480430.11013620067543387No Hit
TGGACGTCATAATTTGTGGTAGAGGGG469660.10766723145770303No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT462410.10600520482552582No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA461330.10575762016859461No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC456690.10469392312400119No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG445520.10213325588518472No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC442250.10138362456280961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)