FastQCFastQC Report
Thu 21 Sept 2023
SRR18584192_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584192_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30373843
Total Bases896.7 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATACT16004685.269231160508731No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC14745364.854624421414176No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGG13105794.314827728582123No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG9728793.2030158317470727No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT7228552.3798601974732008No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT6180952.034958171081611No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC3787721.247033508403925No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTGG3597441.1843875007848035No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA3507891.1549048962951445No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC3254991.0716424655253536No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG3234881.0650216372027734No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG3130251.0305742345477982No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC2523720.8308859698787538No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGA2191370.7214661641597344No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC2185320.7194743187419518No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG1890020.6222525085153038No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGA1831670.603041900229747No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGA1759560.5793010782336631No Hit
TGTAGTCTAGCTGGTCAGGATATTCGG1730910.5698686201808576No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA1689400.5562022560003355No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC1519830.5003746150923346No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1505280.4955843091702291No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCT1477090.48630329721530463No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT1453140.47841822320606586No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC1444730.47564939346002416No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTT1402410.46171635245497256No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGA1400630.46113032190230263No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT1393660.45883558428875787No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTG1384920.455958108429019No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1341870.44178472905124316No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCT1337040.44019454502349276No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTG1256010.4135169856511077No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT1217140.40071979038016364No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT1100860.3624368506810284No Hit
GCGGAGTAGAGCAGTTTGGTAGCTCACGAGG1067280.35138128553571574No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAC905500.2981183513722646No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTT808680.2662422400747907No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC781280.2572213203314444No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTT768740.25309276801094943No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG683050.22488099382090043No Hit
TTGTCGTCTAGTCCGGTTAGGATATCTGG661760.21787167333419089No Hit
GCGTCTGTAGTCCAACGGTTAGGATA656830.21624856624168368No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCA655270.21573496643147858No Hit
TCCATTGTCGTCCAGCCCGGTTAGGATACCTGGCT643430.21183687556428077No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC580360.19107229862220595No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT568970.18732236154641346No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTG563830.18563011601791712No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC562060.18504737777172287No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATA523640.17239833629218404No Hit
CGCTGCAGCGCTGAAGTATGAGCCCCGTGG518290.17063695232769854No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTT512850.16884593760493197No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTGA507200.16698578444617626No Hit
TCCATTGTCGTCCAGTCCGGTTAGGATACCTGGCT501280.16503673901257737No Hit
GGGGATGTAGTTCAGATGGTAGAAC490760.1615732326001685No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAG475520.1565557575312416No Hit
TGTCGTCTAGTCCGGTTAGGATATCTGG453650.14935548326894296No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGA441540.14536850012690195No Hit
GCGACATGAGGAGACTGAAACATCTGAAA430210.1416383168899635No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCT423900.13956087150381333No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGT421450.13875425641727324No Hit
GCCCGTCTAGCTCAGTTGGTAGAG421420.13874437949784624No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG415480.136788749451296No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA406490.1338289659296652No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTA390910.12869955244056538No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG362520.11935269435612741No Hit
GCGCTCTTAGTTCAGTTTGGTAGAACGCGGG349840.115178049744973No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGTGG345770.11383808100937376No Hit
AGCGGAGTAGAGCAGTTTGGTAGCTCACG342780.11285368137314729No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCC340870.11222485083629359No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA323500.10650611448804814No Hit
TCCATTGTCGTCCAGCCCGGTTAGGATACCTG310050.10207796227826686No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT308040.10141620867665643No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT306870.1010310088190026No Hit
GGGCCTGTAGCTCAGAGGTTAGAGCACGT305050.10043180904042995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)