FastQCFastQC Report
Thu 21 Sept 2023
SRR18584193_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584193_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5004883
Total Bases142.3 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTCTGTAGTCCAACGGTTAGGATAATTGC4150838.293560508807099No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT3952487.89724754804458No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA3347046.687548939705483No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT2453244.901693006609745No Hit
GCGTCTGTAGTCCAACGGTTAGGATA1560773.1184944782924995No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1049392.0967323312053447No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT865441.7291912718039562No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC825641.64966893331972No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT729071.4567173698166371No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT660651.3200108773771535No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG658931.316574233603463No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT633661.2660835428120898No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT502801.0046188891928143No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC372010.7432940989829333No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATC321640.6426523856801447No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC274450.5483644672612726No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA260730.5209512390199731No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG243590.48670468420540497No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC237610.4747563529457132No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGA201040.40168771178067497No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT160300.32028720751314266No Hit
GCGTCTGTAGTCCAACGGTTAGGAT151130.30196510088247813No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT144820.28935741354992717No Hit
GTTGCTTCACGACTGGAAGAATGGCCT141430.2825840284378276No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC141370.2824641455154896No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT136890.27351288731424894No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA118750.23726828379404674No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT108960.21770738696588912No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT104120.20803683123062017No Hit
GCGTTTGTAGTCCAACGGTTAGGATA103380.206558275188451No Hit
TGGACGTCATAATTTGTGGTAGAGG98210.1962283633803228No Hit
GCGTCTGTAGTCCAACGGTTAGGATAA86460.17275129108912235No Hit
GGGTGTATAGCTCAGTTGGTAGAGCATTGGGC86460.17275129108912235No Hit
TGGACGTCATAATTTGTGGTAGAGGG84930.16969427656950223No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAC82210.16425958409017752No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCT81630.16310071584090977No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC81300.16244135976805052No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC78620.15708658923695118No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATC77750.15534828686304952No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATAT76670.15319039426096476No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT73340.14653689207120324No Hit
GTTGCTTCACGACTGGAAGAATGGCC72720.14529810187371014No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTT70570.14100229715659687No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCT70510.14088241423425882No Hit
GGGGATGTAGTTCAGATGGTAGAAC67800.13546770224199048No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTC67450.13476838519501855No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT61790.12345942952112968No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATA60390.12066216133324195No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATAT59770.11942337113574884No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAC57150.11418848352698756No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT57000.11388877622114243No Hit
GCCTGATGATCATAGCGAGTTGGTACCACCCCT56650.11318945917417052No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC56420.11272990797187465No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCT55570.11103156657208571No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTT51660.10321919613305647No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATA51090.10208030837084503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)