FastQCFastQC Report
Thu 21 Sept 2023
SRR18584226_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584226_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58752738
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATGTGATGATAAACATGGACAGAAA8795361.4970127860253934No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT8739971.4875851402874194No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA5129180.8730112288554109No Hit
CGACATGAGGAGACTGAAACATCTGAAA4593280.7817984584820541No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCG4112910.7000371625233874No Hit
TTGAACTCTGCTGCTTATTTACAACAGC3884500.6611606764607294No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCGC3621440.6163865929107849No Hit
TGCAAATCTAACGAAGTGCTCCTGGACG3366370.5729724459820068No Hit
TCCCAATGAGGATCTCAAGACCGACCGAT3174190.5402624810438622No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG3096810.5270920310130908No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC2558920.435540553020695No Hit
GCTCTCGTAGCTCAGTTGGTTAGAGCACCCG2403550.4090958280106026No Hit
GCGACATGAGGAGACTGAAACATCTGAAA2122340.3612325267292224No Hit
TGGACGTCATAATTTGTGGTAGAGGG2071220.3525316556310959No Hit
AATCCGTGATGCAAGACAATTTCCTGAAC1908820.3248903906401775No Hit
TTGGAAAGCGAGGTGTGACTGTGTTCA1850340.31493681196610784No Hit
AGAACTCGACACCATGAAGGTGCTGATCG1733150.2949905075062204No Hit
ATCCGTGATGCAAGACAATTTCCTGAAC1644780.2799495063532188No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC1643430.2797197298277401No Hit
CGAACTCTGCTGCGTACCTACAACAGCG1587770.2702461287846704No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCG1586220.26998231129245415No Hit
AGCAAGTGATGATCATACTCGGATT1537690.26172227071357934No Hit
ATGACACGGAGTCGACCCGCAACGCTG1401540.2385488826069689No Hit
ATCGTTCTCGTCGTGTGCCTGGCTCTGTC1286600.21898553902287926No Hit
AGCAAGTGATGATCATACTCGGATTC1268870.2159678073215924No Hit
GGCAGATGATGAGAAGCAAAGACA1238740.21083953568257532No Hit
TGCAAATCTAACGAAGTGCTCCTGGAC1238570.2108106008608484No Hit
CAAAATGAGGAGTTCATATGATCTGAAG1234900.21018594912121372No Hit
TCGAACTCTGCTGCGTACCTACAACAGC1213170.2064873980851752No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCC1210740.20607380033931355No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG1208090.20562275753004058No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG1199070.2040875099301755No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1196060.20357519338077487No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC1186590.20196335360575024No Hit
TGGATGTGATGAAGAAAAGATTGGTC1101860.1875418980473727No Hit
TTTGAAGACATAAGCGTATCTGAGCTT1099750.1871827658482912No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT1076450.18321699322336263No Hit
GTAAATGATGATCTTACTCGGATTC1048550.17846827836346962No Hit
AGCATTGAACTCTCCTGCTTATTTACAGC1047480.17828615919142354No Hit
CGAACTCTGCTGCGTACCTACAACAGC1042850.17749811081144848No Hit
TCTACACTGAACCCTGCTGCTTATTTGC997490.16977761955536438No Hit
CAGATTGTACCAGCTCTGACTCAGCTAGT987620.1680976978468646No Hit
TCCCAATGAGGATCTCAAGACCGACCGATA984090.16749687478394623No Hit
GCATTGAACTCTCCTGCTTATTTACAGC966530.16450807790438635No Hit
TTGGAAAGCGAGGTGTGACTGTGTTC929390.15818667038121695No Hit
ACTAAAGAATACCGTGTGTGCTCTGC916080.15592124404483074No Hit
ATCCCAATGAGGATCTCAAGACCGACCGAT904080.1538787860405757No Hit
TGGCACCCTCTTACAACTGCAACAATTGC874900.14891220899356214No Hit
GCAAGTGATGATCATACTCGGATTC862760.14684592231259078No Hit
AGATTGTACCAGCTCTGACTCAGCTAGT861310.14659912530374328No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT859080.14621956852461923No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC854900.14550811231980373No Hit
TGATGTGATGATAAACATGGACAGAA847410.14423327811548117No Hit
CGGGAAATGATGAATGAAACATTGG847410.14423327811548117No Hit
TTGTCGTCTAGTCCGGTTAGGATATCTGG835010.14212273817775098No Hit
TCGAACTCTGCTGCGTACCTACAACAGCG820690.13968540495933993No Hit
TACTAAAGAATACCGTGTGTGCTCTGC806140.1372089246291807No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTT780600.1328618931767912No Hit
TGGACGTCATAATTTGTGGTAGAGGGG751920.1279804185466216No Hit
AGCAAGTGATGATCATACTCGGATTCC722200.12292193088941658No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA719960.12254067206195565No Hit
TGGAAATGAGGACCCTTTCCCCAGCTGATC717120.12205729033428195No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATA713680.12147178570639551No Hit
GCAAGTGATGATCATACTCGGATTCC699810.11911104466314404No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGGC662970.11284069859008101No Hit
CTTCCATTCAACCAACTGTCTACACTGA656050.11166288114096061No Hit
GCAACTCGTGCTACCTCTGATCAACCAAGT650740.11075909347407775No Hit
TGCGATGATGAGTTCTCATCAGCTGAGAGCT642390.10933788311278361No Hit
GGGTGTTTGGTCTAGTGGTATGATTCT631210.10743499307215267No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT624390.10627419610640104No Hit
CAGCAAACGCACTCTGTCCCAAAACCT615640.10478490381163172No Hit
AACCAACTGGCTGCATTGAACTCTGCTGC605070.1029858387195504No Hit
TCGCATGACAAGACTGGGCAATACTGAGGCCT598970.10194758923405409No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCGT589770.1003817047641252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)