FastQCFastQC Report
Thu 21 Sept 2023
SRR18584228_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584228_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13860482
Total Bases372.1 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAAGTGATGATCATACTCGGATT2594971.8722076187538066No Hit
TGATGTGATGATAAACATGGACAGA2288221.6508949688762629No Hit
TGATGTGATGATAAACATGGACAGAAA1263930.9118946945712277No Hit
GCAAGTGATGATCATACTCGGATT1254950.9054158434028484No Hit
TGAGAATTTCTGGAAGGGCTCCCTC993770.71698083804012No Hit
AGGATATGATGGCTCAGTAAAAGGTC850690.6137521047247851No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT702580.5068943489844004No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT558730.40311007943302407No Hit
AGCAAGTGATGATCATACTCGGATC461430.33291050051506144No Hit
GCGTCTGTAGTCCAACGGTTAGGATA455350.32852392867722785No Hit
GGGGATGTAGTTCAGATGGTAGAAC446890.3224202448370843No Hit
TGATGTGATGATAAACATGGACAGAA444630.32078970991052114No Hit
TGATGTGATGATAAACATGGACAG406020.29293353578901515No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT392980.28352549355787193No Hit
GTAAATGATGATCTTACTCGGATT387990.279925330158071No Hit
TGCCATGATGGACTTCTCGTTAACCTGAGA354890.2560444867646017No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT324750.2342992112395514No Hit
GCGTCTGTAGTCCAACGGTTAGGAT324570.23416934562593134No Hit
TACAATGATGTCTTTCTCGTTAACCTGAG319640.23061247076400374No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA309970.22363580141008083No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT305250.22023043643070997No Hit
TGCCATGATGGACTTCTCGTTAACCTGAG290250.20940830196237042No Hit
TCCCTGTGATGAGCATTTTAGTAATCTGAG239440.17275012513994825No Hit
GCGACATGAGGAGACTGAAACATCTGAAA230730.16646607239199906No Hit
GCAAGTGATGATCATACTCGGATC223070.16093956905683368No Hit
AGCAAGTGATGATCATACTCGGAT201970.14571643323803601No Hit
TGCAAATCTAACGAAGTGCTCCTGGAC199210.14372516049586154No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC187500.13527668085424446No Hit
TGAGAATTTCTGGAAGGGCTCCCTT177650.12817014588670148No Hit
TGCAATGATGTCTTTCTCGTTAACCTGAG163740.11813441985639461No Hit
TGAGAATTTCTGGAAGGGCTCCCT162280.11708106543480955No Hit
GGGATATGATGAGTGGTAAAAACTCGGT150070.10827184797758116No Hit
GGACTGGCCGTCGACATGGAGCAAGAGT145470.10495306007395702No Hit
AGAACTCCGAAGTTAAGCGTGCTTGGGC140540.10139618521202944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)