FastQCFastQC Report
Thu 21 Sept 2023
SRR18584236_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584236_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28872006
Total Bases808.8 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG14027864.8586371172131235No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC13707144.747553737693183No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT13207254.574413707173655No Hit
TGATGTGATGATAAACATGGACAGAAA8718773.019800563909553No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTCG5574261.9306798426129448No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA4506881.5609860984373582No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC4405551.5258898186707222No Hit
GCGACATGAGGAGACTGAAACATCTGAAA4286631.4847011323009562No Hit
AGCAAGTGATGATCATACTCGGATTC4064211.407664573081621No Hit
CGACATGAGGAGACTGAAACATCTGAAA3297301.1420404941727984No Hit
GCAAGTGATGATCATACTCGGATTC3261951.1297968004024384No Hit
TCCCAATGAGGATCTCAAGACCGACCGAT3016261.0447005310264899No Hit
GTAAATGATGATCTTACTCGGATTC2938811.0178752387347108No Hit
AGCAAGTGATGATCATACTCGGATT2910911.0082118990970006No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC2870430.994191397715836No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC2722290.9428821814459307No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC2422010.8388783238684558No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT1979160.6854944543860236No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTCG1866790.6465744015154333No Hit
GCAAGTGATGATCATACTCGGATTCC1683440.5830699813514864No Hit
AGCAAGTGATGATCATACTCGGATTCC1511220.5234205063548407No Hit
GGCAGATGATGAGAAGCAAAGACA1239060.42915618679214734No Hit
GGGGATGTAGTTCAGATGGTAGAAC1159880.4017316981715784No Hit
TGATGTGATGATAAACATGGACAGAA1129130.39108124319453247No Hit
CATAATGAGGAAAACCTAGATTAGTCTGATC1087590.3766936041783865No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCGCTT1082990.37510036538507235No Hit
CAAAATGAGGAGTTCATATGATCTGAAG1043040.361263432821398No Hit
TCCCAATGAGGATCTCAAGACCGACCGATA1040610.3604217871110168No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1021620.3538444817447045No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCGC979490.3392524925355031No Hit
GCGTCTGTAGTCCAACGGTTAGGATA946390.3277881003488292No Hit
TGCAATGATGTCTTTCTCGTTAACCTGAG937910.3248509992689805No Hit
TGCAATGATGTCTTTCTCGTTAACCTGAGA911630.31574875677152464No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG882230.3055658827446905No Hit
TGCAAATCTAACGAAGTGCTCCTGGACG874920.3030340184883586No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT860720.29811575960464953No Hit
TGGAGATGAGGATCCTTTCCCCAGCTGATC850340.29452058163191014No Hit
TGCGATGACGAGGTAAACACAACCCTGATC825030.285754304706088No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT772500.2675602103989588No Hit
AGCAATGATGAATCGCCCTTTGAATTAGA760620.26344549803709516No Hit
TGCCGGTGATGACAGCGTATGGCATGAGTC752500.2606330852106362No Hit
CAGCAAACGCACTCTGTCCCAAAACCT734920.2545441421701007No Hit
GACCATGAGGATATGCAAATCTGATCCT726710.2517005572802943No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTCG721850.2500172658595319No Hit
TGATGTGATGATAAACATGGACAGA719520.24921025577509232No Hit
CGGGAAATGATGAATGAAACATTGG700040.24246323584166612No Hit
CAAAATGAAGAGGTCTTGTAATCTGAAG691280.23942915500918088No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT691160.23938759225805092No Hit
TGGAAATGAGGACCCTTTCCCCAGCTGATC690240.2390689444993881No Hit
CAACATGAGGAGGTCATACATTCTGAAG687310.23805412065929882No Hit
AACGATGATGAAAAGCTCCGTGACG685060.23727481907561254No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA671590.23260940026127733No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC649070.22480945729922613No Hit
TACAATGATGTCTTTCTCGTTAACCTGAG642100.22239535417109568No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG630440.21835684018630366No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATTC627930.21748748597516915No Hit
TTGGAAAGCGAGGTGTGACTGTGTTCA627390.21730045359508446No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCC625950.21680170058152523No Hit
GTAAATGATGATCTTACTCGGATTCC624690.21636529169466093No Hit
GCAAGTGATGATCATACTCGGATT614430.21281167647305144No Hit
CATGATGAGGAAAGAAATACAAGTCTGATC613830.21260386271740178No Hit
AGCGACATGAGGAGACTGAAACATCTGAAA602690.20874545398750613No Hit
AGGATATGATGGCTCAGTAAAAGGTCTGAG585110.20265651094697057No Hit
TACAATGATGTCTTTCTCGTTAACCTGAGA570840.19771400712510243No Hit
GACCATGAGGATATGCAAATCTGATCCTG551700.19108474831987773No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCG491900.17037264400679328No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGG491220.17013712175039034No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATATCTG474450.16432872727998185No Hit
TGCCGGTGATGACAGCGTATGGCATGAGTCT448280.1552645839710618No Hit
AGAACTCGACACCATGAAGGTGCTGATCGT447670.15505330665281797No Hit
TGCAATGATGTCTTTCTCGTTAACCTGAGG440660.1526253492743109No Hit
CTGGTTGATGATCCATGACCTGTGGG440520.15257685939799265No Hit
ATCCCAATGAGGATCTCAAGACCGACCGAT439630.15226860232711228No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTCG438670.1519361003180728No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT405260.14036433769097997No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCG401900.1392005806593418No Hit
GCGTCTGTAGTCCAACGGTTAGGAT394390.13659944515112668No Hit
GTAAATGATGATCTTACTCGGATT388480.13455247965797737No Hit
TTGAACTCTGCTGCTTATTTACAACAGC363060.1257481035436194No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATA358960.12432804288001326No Hit
GTCTGTGATGAAGTCGCCCGATTTGGTTGAG336660.1166042982950336No Hit
ACCGATGATGAAATCGCTCTGTGACA332270.11508379431619681No Hit
TGCCATGATGGACTTCTCGTTAACCTGAGA326940.11323771545350884No Hit
TGCCGGTGATGACAGCGTATGGCATGAGT321360.11130504752596684No Hit
CTGGTTGATGAGTCATGACCTGTGGGCC320270.11092751920320328No Hit
ACCGATGATGAAATCGCTCTGTGACAAC315810.10938277028620734No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATA310090.10740161248234709No Hit
TCCATTGTCGTCCAGCCCGGTTAGGATACCTG308420.10682319752912214No Hit
TGTGTGACGGATCACGTAACTTGTCCAAC307350.1064525963315469No Hit
AGAACTCGACACCATGAAGGTGCTGATCG307060.10635215301631623No Hit
GGTTCCATGGTGTAGTGGTTATCACTCCAGA302630.10481779478710278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)