FastQCFastQC Report
Thu 21 Sept 2023
SRR18584238_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584238_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55710791
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length20-50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATACT33105625.942407100268959No Hit
TGATGTGATGATAAACATGGACAGAAA20228333.630953651331212No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA8471931.520698207282679No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC8369631.502335517009622No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC6787461.2183384723437152No Hit
TCCCAATGAGGATCTCAAGACCGACCGAT6443311.1565640846851375No Hit
CGACATGAGGAGACTGAAACATCTGAAA6050641.0860804327836595No Hit
AGCAAGTGATGATCATACTCGGATT5354660.961153109457735No Hit
GCGACATGAGGAGACTGAAACATCTGAAA5349730.9602681821552309No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG4459620.8004948269357727No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC4413230.7921678943671793No Hit
AATCCGTGATGCAAGACAATTTCCTGAAC3649690.6551136565266144No Hit
TTGTAGTCTAGCTGGTCAGGATATTCGG3594590.6452232925574508No Hit
AGCAAGTGATGATCATACTCGGATTC3571020.6409925143586636No Hit
TCCATTGTCGTCCAGCCCGGTTAGGATACCTGGCT3516270.6311649748430246No Hit
GTAAATGATGATCTTACTCGGATTC3427550.6152398733667236No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG2809660.5043295831143377No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCG2531240.45435362782768596No Hit
ATCCGTGATGCAAGACAATTTCCTGAAC2506490.4499110414713013No Hit
GCAAGTGATGATCATACTCGGATTC2440800.43811978903692106No Hit
TGATGTGATGATAAACATGGACAGAA2409470.43249610295427326No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA2160960.3878889459673979No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC2126320.3816711200528458No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT2055480.3689554506594602No Hit
TGCAAATCTAACGAAGTGCTCCTGGACG2013490.36141831122089074No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1953580.3506645597618601No Hit
CAAAATGAGGAGTTCATATGATCTGAAG1889370.3391389650166698No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT1696400.30450115131196037No Hit
TGGAAATGAGGACCCTTTCCCCAGCTGATC1611520.28926532384004383No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACTC1553700.2788867241177746No Hit
GGCAGATGATGAGAAGCAAAGACA1516080.2721339928560699No Hit
GCAAGTGATGATCATACTCGGATT1486130.2667580146187477No Hit
GTAAATGATGATCTTACTCGGATT1443150.2590431717259229No Hit
CGGGAAATGATGAATGAAACATTGG1432170.25707227886963585No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1420080.25490214274645645No Hit
TCCCAATGAGGATCTCAAGACCGACCGATA1354090.24305704078048362No Hit
ATGACACGGAGTCGACCCGCAACGCTGA1334280.23950117671098944No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACTC1270300.22801686660668666No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCGCTT1231210.22100027264017846No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATACT1221540.2192645227385122No Hit
TGCAATGATGTCTTTCTCGTTAACCTGAG1175980.21108657387399146No Hit
AGGATATGATGGCTCAGTAAAAGGTCTGAG1131450.20309350840127186No Hit
GGGGATGTAGCTCAGATGGTAGAGCACTCGC1108970.199058383500604No Hit
CAGCAAACGCACTCTGTCCCAAAACCT1086180.19496761408395727No Hit
TGGAGATGAGGATCCTTTCCCCAGCTGATC1055550.18946957690835875No Hit
TCCCAATGAGGATCTCAAGACCGACCGAC1011790.1816147252333933No Hit
TACAATGATGTCTTTCTCGTTAACCTGAG988090.17736061223758248No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA947740.17011785023838558No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG943710.16939447153065912No Hit
ATCCCAATGAGGATCTCAAGACCGACCGAT933800.1676156420037188No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTT924200.16589245699275748No Hit
AGCAAGTGATGATCATACTCGGATTCC917460.1646826375163117No Hit
TGATGTGATGATAAACATGGACAGA915510.16433261556096015No Hit
TGCCGGTGATGACAGCGTATGGCATGAGTC906190.16265969011281856No Hit
GCAAGTGATGATCATACTCGGATTCC898590.1612955019791408No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT873480.15678829618484505No Hit
AGCAAGTGATGATCATACTCGGATC849650.15251084839201082No Hit
GACCATGAGGATATGCAAATCTGATCCT811830.14572221744257768No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCC785640.1410211533345488No Hit
CTGGTTGATGATCCATGACCTGTGGG711760.12775980868769213No Hit
TTGTAGTCTAGCTGGTCAGGATACTCGG701880.12598636411391106No Hit
ACCGATGATGAAATCGCTCTGTGACA693290.12444447252597794No Hit
TTGTCGTCTAGTCCGGTTAGGATATCTGG671280.1204937118914718No Hit
TGCCGGTGATGACAGCGTATGGCATGAGTCT668240.1199480366380007No Hit
AGAACTCGACACCATGAAGGTGCTGATCG665810.11951185543210112No Hit
AACGATGATGAAAAGCTCCGTGACG659240.11833255069022444No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTT657690.11805432811032965No Hit
TTGAACTCTGCTGCTTATTTACAACAGC652720.11716222087027987No Hit
CAAAATGAAGAGGTCTTGTAATCTGAAG636790.1143028107427159No Hit
CGGGAAATGATGAATGAAACATTG631270.11331197936141311No Hit
ATCGTTCTCGTCGTGTGCCTGGCTCTGTC624780.1121470344946278No Hit
TCCATTGTCGTCCAGCCCGGTTAGGATACCTGGCC609380.10938275853954398No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCA604740.10854988578424601No Hit
TTGGAAAGCGAGGTGTGACTGTGTTCA592490.10635102991088388No Hit
CATAATGAGGAAAACCTAGATTAGTCTGATC584860.10498145682404689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)