FastQCFastQC Report
Thu 21 Sept 2023
SRR18584239_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584239_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13849438
Total Bases363.1 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAAGTGATGATCATACTCGGATT1732761.2511410210291567No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT1383210.9987481080459727No Hit
GTAAATGATGATCTTACTCGGATT1163100.839817471293781No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1073440.7750783822419364No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT919660.6640413856504502No Hit
GCAAGTGATGATCATACTCGGATT808550.5838143035118103No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT788200.5691205664807482No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA733770.5298193327411552No Hit
TGGTCTGTGATGAAGTCGCCCGATT593860.42879718296150354No Hit
ATAAATGATGATTTTACTCGGATT485820.35078679726931883No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC484940.3501513924247323No Hit
GCGTCTGTAGTCCAACGGTTAGGATA435420.314395428897548No Hit
TGACAAGACTGGGCAATACTGAGGCCT417650.3015645833426598No Hit
GCGTCTGTAGTCCAACGGTTAGGAT401750.2900839730825179No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT389400.2811666437295145No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC385390.27827121938088756No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT313360.22626188874956513No Hit
GTGCTGTAGATGATCGTTCCTGGTCAGG299180.21602320614020581No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT252570.18236841090591546No Hit
TGGACGTCATAATTTGTGGTAGAGGG243240.1756316754513793No Hit
GTTGCTTCACGACTGGAAGAATGGCCT241790.17458470155973116No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT237420.17142933886559153No Hit
AACGATGATGAAAAGCTCCGTGACG236830.17100332879933466No Hit
AGCAAGTGATGATCATACTCGGATC231350.16704648953986437No Hit
GGGGATGTAGTTCAGATGGTAGAAC220010.15885843165621594No Hit
GCGACATGAGGAGACTGAAACATCTGAAA213620.15424452602336644No Hit
TGATGTGATGATAAACCTGGACAGA198350.1432188078678716No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT197740.14277835678241962No Hit
TGAACGACATACGCCTATCTGAGCTT193720.13987571192419507No Hit
GTAAATGATGATCTTACTCGGAT192110.1387132098789857No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATC182720.13193315136686412No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACC181240.13086451594642323No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC181100.13076342881205721No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT165410.1194344492534643No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC156620.11308762131719713No Hit
GTAAATGATGATCTTACTCGGATC155770.11247387800140338No Hit
CGTAAATGATGATCTTACTCGGATT153460.11080594028436389No Hit
TCCCTGTGATGAGCATTTTAGTAATCTGAG151100.10910190001933652No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC139680.1008560780589075No Hit
GTTGCTTCACGACTGGAAGAATGGCC139180.10049505257902884No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAC138810.1002278937239186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)