FastQCFastQC Report
Thu 21 Sept 2023
SRR18584240_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584240_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17625201
Total Bases487.6 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATGTGATGATAAACATGGACAGA1978901.1227673375185905No Hit
TCCCTGTGATGAACATTTTAGTAATCTGAGT1733220.9833760193713535No Hit
TCCCTGTGATGAGCATTTTAGTAATCTGAG1671630.9484317370338076No Hit
AGCAAGTGATGATCATACTCGGATT1514030.8590143170565828No Hit
TGATGTGATGATAAACATGGACAGAAA1473500.8360188346220846No Hit
TCCCTGTGATGAGCATTTTAGTAATCTGAGA1365060.7744932951402936No Hit
TGAGAATTTCTGGAAGGGCTCCCTC872150.494831236250866No Hit
TCCCTGTGATGAGCATTTTAGTAATCTGAGT838440.475705213234164No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT725760.41177402742811275No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC704220.3995528902053372No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC567530.3219991647187456No Hit
GCAAGTGATGATCATACTCGGATT550450.3123084950917723No Hit
AGGATATGATGGCTCAGTAAAAGGTC514030.29164490095744156No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC510470.2896250658361286No Hit
TGATGTGATGATAAACATGGACAGAA501940.2847854047168029No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGC500250.2838265504035954No Hit
GGGGATGTAGTTCAGATGGTAGAAC473620.26871750285287527No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT424120.24063271675596776No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT397530.22554636398189162No Hit
TCCCTGTGATGAACATTTTAGTAATCTGAG350700.19897645422596882No Hit
GCGTCTGTAGTCCAACGGTTAGGATA326470.18522909327388662No Hit
TGATGTGATGATAAACATGGACAG312470.17728592144849864No Hit
TCCCTGTGATGAGCATTTTAGTAATCTG306710.17401787361176763No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT302020.17135691105026263No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACTC287940.16336834967158673No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA284810.1615924833991964No Hit
GCATATGATGTCTTACACTTGATCTCTGAAC283950.16110454570135113No Hit
TCCCTGTGATGAACATTTTAGTAATCTGAGC276860.15708189654120824No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCG265480.150625232586No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGCT264870.15027913724217953No Hit
GCGTCTGTAGTCCAACGGTTAGGAT254140.14419126340743577No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG250130.1419161120488782No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT245090.1390565701917385No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG241800.13718992481277234No Hit
TGCAAATCTAACGAAGTGCTCCTGGAC240990.13673035558573204No Hit
AGCAAGTGATGATCATACTCGGATC226510.12851484644061648No Hit
AGAACTCCGAAGTTAAGCGTGCTTGGGC209090.11863127121216945No Hit
GTAAATGATGATCTTACTCGGATT196570.11152780612260818No Hit
TCGGGTGATGAGTTGCATAGTTCAGATGATC188180.10676757672153639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)