FastQCFastQC Report
Thu 21 Sept 2023
SRR18584241_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584241_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21783957
Total Bases577.5 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATGTGATGATAAACATGGACAGA1325810.6086176170839852No Hit
AGCAAGTGATGATCATACTCGGATT939940.43148267323517026No Hit
GGGGATGTAGTTCAGATGGTAGAAC741220.3402595772659669No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT687390.3155487315734235No Hit
TGATGTGATGATAAACATGGACAGAAA663670.3046599844096277No Hit
GCAAGTGATGATCATACTCGGATT560190.25715713632743586No Hit
TGATGTGATGATAAACATGGACAG467930.21480486763722495No Hit
TGATGTGATGATAAACATGGACAGAA430540.19764086019817242No Hit
GTAAATGATGATCTTACTCGGATT309790.1422101595224412No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT303210.1391895880073579No Hit
TGCAAATCTAACGAAGTGCTCCTGGAC300710.1380419544529949No Hit
TGAGAATTTCTGGAAGGGCTCCCTC281430.12919140448174773No Hit
GCGTCTGTAGTCCAACGGTTAGGAT277980.12760767017672686No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA245150.11253694634083239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)