FastQCFastQC Report
Thu 21 Sept 2023
SRR18584247_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584247_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19608488
Total Bases537.3 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATATT6705503.4196925331519696No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA3752981.9139568537869924No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT1846550.9417095290570084No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1184120.6038813395505048No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT1017420.5188671354976477No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT893530.4556853134214122No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATC743440.3791419307801805No Hit
GCGTCTGTAGTCCAACGGTTAGGATA505060.2575721289678225No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA288970.14736985330026467No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT280080.14283610240626407No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT246630.12577716344064876No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC241900.12336494277376206No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT207740.10594391571649993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)