FastQCFastQC Report
Thu 21 Sept 2023
SRR18584248_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18584248_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13508243
Total Bases366.6 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATATT8937176.6160861927047065No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA4156243.0768176142522754No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT3718392.752682195604565No Hit
GCGTCTGTAGTCCAACGGTTAGGATA3375852.4991036954250823No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT1774421.3135831210617102No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT1537471.1381717074529973No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT1288210.9536473396281071No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT1080230.7996820904095373No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATC1013400.7502085948557484No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT856190.633827804252559No Hit
GCGTCTGTAGTCCAACGGTTAGGAT624430.46225848913141404No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC528790.39145727538363057No Hit
TGAGAATTTCTGGAAGGGCTCCCTC506510.37496364256994785No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA352720.2611146394094332No Hit
ACGGATGCGATCATACCAGCACTAAAGC321090.2376993070083208No Hit
GGGGATGTAGTTCAGATGGTAGAAC318430.23573013899735148No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT278550.20620742460733052No Hit
TCCGTTGTAGTCTAGGTGGTTAGGATACT272600.20180270668805705No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC266020.19693160687144878No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATAT255400.18906974060209014No Hit
GCGTCTGTAGTCCAACGGTTAGGATAA246330.1823553218579204No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAC244810.18123008299450935No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT227550.16845269958498674No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACA209940.1554162151213892No Hit
GCGTTTGTAGTCCAACGGTTAGGATA202340.14979002080433407No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAC173540.12846970549759876No Hit
TGGACGTCATAATTTGTGGTAGAGGG172280.1275369417029291No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATC168560.12478306764247579No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAC157530.11661768299548654No Hit
TCCATTGTCGTCTAGTCCGGTTAGGATA155730.11528516328881558No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACG155240.1149224218131107No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATAT146340.10833385215234875No Hit
GACGGATGCGATCATACCAGCACTAAAGC144820.10720861328893773No Hit
TGGGCTTCATTCAGAGCATGAATGC140960.10435109880685446No Hit
CCGACCTTAGCTCAGTTGGTAGA139740.10344794656122192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)