FastQCFastQC Report
Thu 21 Sept 2023
SRR18590141_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590141_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33969561
Total Bases897.5 Mbp
Sequences flagged as poor quality0
Sequence length10-134
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT12813053.7719209853786455No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA6700381.9724658790851022No Hit
TACGATCTGCTGAGGGTAAGCCCTTC6239571.8368120800854624No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT5739471.6895920438889391No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT4802641.4138069078961601No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT4482921.3196873518618626No Hit
AATACCCTTCGGTGGGCTGAGG4231081.2455503914224855No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT3936291.1587697586083023No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG3873291.140223743250612No Hit
AAATACCCTTCGGTGGGCTGAGG3386520.9969278083988191No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC3140570.9245247532047883No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT2770240.8155065648331458No Hit
GTGAGGCTTTCGGACTGGCC2757300.8116972721549154No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG2700550.7949911392731863No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC2450910.7215018174653478No Hit
CCAGCGGAGGGATCATTA2152400.6336260866014725No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1480650.4358755180851469No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1475700.43441833116418554No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT1368300.4028017906972657No Hit
AGTGAGGCTTTCGGACTGGCC1322390.38928674998184404No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1319810.3885272464957672No Hit
CAATACCCTTCGGTGGGCTGAGG1311980.3862222417298828No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC1152410.33924783425961846No Hit
ACCAGCGGAGGGATCATTA1114250.32801424781438887No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA1068530.3145551395262364No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1060810.312282516691929No Hit
GGCCGGAAAGTTATCCAAACT1036110.30501130114692976No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC1023790.30138452481031475No Hit
ACGATCTGCTGAGGGTAAGCCCTTC973000.28643290385766246No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC927350.27299440225324073No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT905670.26661221792062606No Hit
ATACCCTTCGGTGGGCTGAGG836500.24624987058266662No Hit
TGAGGGTAAGCCCTTC827040.24346502446705157No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG820830.24163691723893635No Hit
ATGCCTGTTCGAGCGTCATT808700.2380660733295906No Hit
GCGGGCATGCCTGTTCGAGCGTCATT806070.23729185078370604No Hit
AATACCCTTCGGTGGGCTGAGGT787510.23182813578309122No Hit
AAATACCCTTCGGTGGGCTGAGGT735820.2166115717539005No Hit
CGGGCATGCCTGTTCGAGCGTCATT728600.21448613951766995No Hit
CGGCGCATCATCGACCGATCCTG720550.21211637088863175No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA688480.20267556592797886No Hit
GGCGCATCATCGACCGATCCTG682520.20092105399890214No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT680470.20031757254678684No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCAT678400.1997082034707484No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG677600.19947269851382535No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTC651950.19192182083248No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA622450.18323757554594244No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC608110.17901614919309672No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC596630.17563665306125092No Hit
CGGCGCATCATCGACCGATCCTGA590390.17379971439725111No Hit
TACGATCTGCTGAGGGTAAGCCCTT578590.1703260162826361No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA575990.16956062517263618No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT574580.1691455476860593No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT571670.16828889840525169No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT562940.1657189505628289No Hit
AATACCCTTCGGTGGGCTGAG562920.1657130629389058No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA551010.16220698289271385No Hit
ACTCTGGTGGAGGCTCGCAG548140.1613621088597524No Hit
ACGACCAGCGAATACCTGGTGTTGTATGT543190.15990492193879102No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCAT539840.15891874493167574No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG539720.15888341918813728No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA532110.15664317828540675No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAA527080.15516244086875305No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCAT523350.1540643990070993No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT515290.15169168656609958No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC514610.15149150735271497No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT507710.14946027709925366No Hit
GTGAGGCTTTCGGACTGGC500060.14720826094867695No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGG491430.14466775122586953No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC488610.14383759625271578No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA461710.13591874207617813No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG459430.13524755294894744No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGCC452420.1331839407639092No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA447120.13162372042429396No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAGG440400.12964547878614033No Hit
AAATACCCTTCGGTGGGCTGAG431030.12688712697817908No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAG428610.12617472448348685No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCT427900.12596571383421765No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC416930.12273635211241028No Hit
TTACGATCTGCTGAGGGTAAGCCCTT408610.12028710056041055No Hit
TCTGGCGGGCATGCCTGTTCGAGC407410.11993384312502596No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC400750.11797326435864154No Hit
TTCGAGCGTCATT397730.11708423314625703No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTT385390.11345156918571894No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG380210.11192667458964217No Hit
TTACCCAATCCCGACACGGGGAGGTAGT380040.11187662978629605No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC367770.10826457250948873No Hit
ATAACTTCTCGAATCGCAT364750.1073755412971042No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGT349680.10293921667106619No Hit
CAATACCCTTCGGTGGGCTGAGGT349280.10282146419260468No Hit
ACTCTGGTGGAGGCTCGCAGCGGT348910.10271254315002776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)