FastQCFastQC Report
Thu 21 Sept 2023
SRR18590142_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590142_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36093156
Total Bases944.5 Mbp
Sequences flagged as poor quality0
Sequence length10-134
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT12637633.5013923415286823No Hit
TACGATCTGCTGAGGGTAAGCCCTTC9056372.509165449538411No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA8804642.4394209251194328No Hit
AATACCCTTCGGTGGGCTGAGG8563822.372699134428699No Hit
AAATACCCTTCGGTGGGCTGAGG6435231.782950208067147No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT5845361.6195203323311491No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT5673691.5719572984972552No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT4761731.3192888978730484No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT3787971.0494981375416437No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC3738911.035905532893826No Hit
GTGAGGCTTTCGGACTGGCC3650451.0113967312805785No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT3506800.971596942090628No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG3260440.9033402343646534No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC2755210.7633607878457622No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT2321750.6432659975758285No Hit
CCAGCGGAGGGATCATTA2321520.6432022735833907No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG2191760.6072508594150092No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2170310.6013079044680936No Hit
CAATACCCTTCGGTGGGCTGAGG1764850.4889708176253692No Hit
GGCCGGAAAGTTATCCAAACT1411260.39100487638154996No Hit
ACGATCTGCTGAGGGTAAGCCCTTC1398040.38734213212056046No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1380180.3823938255773477No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1377400.38162359645136046No Hit
AGTGAGGCTTTCGGACTGGCC1361600.37724603523172096No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1359940.3767861142428221No Hit
AATACCCTTCGGTGGGCTGAGGT1318510.3653074837789192No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC1278250.354153014493939No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC1261920.3496286110308558No Hit
ACCAGCGGAGGGATCATTA1253270.3472320347935215No Hit
TGAGGGTAAGCCCTTC1195300.3311708180908314No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT1194330.33090206907924596No Hit
AAATACCCTTCGGTGGGCTGAGGT1191190.33003209805205175No Hit
ATACCCTTCGGTGGGCTGAGG1130420.3131951110066407No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT1004630.2783436283599029No Hit
GCGGGCATGCCTGTTCGAGCGTCATT961400.2663662883899651No Hit
GGCGCATCATCGACCGATCCTG954840.26454876930130466No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA924360.256103954999114No Hit
ATGCCTGTTCGAGCGTCATT920040.2549070521846302No Hit
CGGCGCATCATCGACCGATCCTG913910.25320866925574476No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA847030.23467884049818197No Hit
AGGCCAGCATCAGCTCGCTGTC847000.2346705286730814No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA846830.2346234283308448No Hit
CGGGCATGCCTGTTCGAGCGTCATT837930.232157586884339No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA813660.22543332037796862No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG683920.18948744742632093No Hit
ACTCTGGTGGAGGCTCGCAG657720.18222845350514652No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC623760.17281946749128838No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAA619930.17175832448678083No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT598620.16585415805700116No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA593230.16436080014726337No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG590640.16364321258024653No Hit
ACGACCAGCGAATACCTGGTGTTGTATGT590610.16363490075514592No Hit
CGGCGCATCATCGACCGATCCTGA547480.15168526686887676No Hit
TTCGAGCGTCATT542190.15021961504280756No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT539460.14946323895865465No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA538780.14927483758970814No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT523960.14516879599002094No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG509830.1412539263676471No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC509300.1411070841242035No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTC504700.13983260427544766No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA491620.1362086485315942No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC466160.12915467962956745No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT466160.12915467962956745No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG465560.12898844312755584No Hit
CCGGAGCTAGGGTTTAACGGCCGG454930.12604328643358315No Hit
TCTTCTAAAGCTAAATACCG454420.12590198540687325No Hit
TGCACAATACCCTTCGGTGGGCTGAGG445900.12354142707830815No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC437090.12110052110710406No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC421880.11688642578110932No Hit
ATAACTTCTCGAATCGCAT415910.1152323725860936No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC415640.11515756616018837No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA407020.11276930174795466No Hit
TTTAAGCCATGCATGTCTAAGTATAAGCAA405760.11242020509373023No Hit
TTAAGCCATGCATGTCTAAGTATAAGCAA405530.11235648110129244No Hit
ATCGACCGATCCTG403520.1117995888195535No Hit
TCTTTGAACGCACATTGCGCCCGC401230.11116511950354244No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG392230.10867157197336802No Hit
TACGATCTGCTGAGGGTAAGCCCTT391220.10839174052831513No Hit
TTACCCAATCCCGACACGGGGAGGTAGT387990.10749683402581918No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT387150.1072641029230029No Hit
AAGCCATGCATGTCTAAGTATAAGCAA379960.10527203550723023No Hit
ATCTTTGAACGCACATTGCGCCCGC379810.10523047638172733No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCT370110.10254298626587267No Hit
CAATACCCTTCGGTGGGCTGAGGT365590.10129067128405175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)