FastQCFastQC Report
Thu 21 Sept 2023
SRR18590143_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590143_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34148845
Total Bases890.6 Mbp
Sequences flagged as poor quality0
Sequence length10-134
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT14809284.336685472085513No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA8440362.4716384990473323No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT7607052.2276156045687636No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC6030661.7659923783659448No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT4436531.2991742473281307No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT4389851.2855046781230814No Hit
GTGAGGCTTTCGGACTGGCC4271001.250701158413996No Hit
AATACCCTTCGGTGGGCTGAGG3768341.1035043791378596No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT3444321.0086197644459132No Hit
AGTGAGGCTTTCGGACTGGCC3111950.9112899718863112No Hit
TACGATCTGCTGAGGGTAAGCCCTTC3047720.8924811366240938No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC2621380.7676335758940017No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG2475310.724859069172032No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC2395570.7015083526251034No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG2207000.6462883298102762No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC2187260.6405077536297348No Hit
AATACCCTTCGGTGGGCTGAGGT2165580.6341590762440136No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT2049720.6002311351965198No Hit
AAATACCCTTCGGTGGGCTGAGG1857400.5439129786087934No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT1567650.4590638424227818No Hit
GGCCGGAAAGTTATCCAAACT1373010.40206630707422164No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1264620.3703258485023432No Hit
AAATACCCTTCGGTGGGCTGAGGT1248540.3656170508841514No Hit
CCAGCGGAGGGATCATTA1184790.346948776744865No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC1071840.3138729875051411No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT1056120.3092696107291476No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1031780.30214199045384993No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC1020000.2986923862285826No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1011910.296323345635848No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG990140.2899483130395772No Hit
GGCGCATCATCGACCGATCCTG979060.286703693785251No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA958330.2806332102886642No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG897870.2629283655128014No Hit
TCTGGCGGGCATGCCTGTTCGAGC878150.2571536460457155No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC859320.2516395503273976No Hit
CAATACCCTTCGGTGGGCTGAGG853000.2497888288754715No Hit
TGAGGGTAAGCCCTTC834290.2443098734378864No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA775170.2269974284635395No Hit
CGGGCATGCCTGTTCGAGCGTCATT756270.22146283424812757No Hit
AATGGCTCAGTGAGGCTTTCGGACTGGCC751840.22016557221774266No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG748560.21920507121104682No Hit
ACGATCTGCTGAGGGTAAGCCCTTC713080.2088152615410565No Hit
ACTCTGGTGGAGGCTCGCAG682750.19993355558584777No Hit
GCGGGCATGCCTGTTCGAGCGTCATT675100.1976933626891334No Hit
ATGCCTGTTCGAGCGTCATT661470.19370201246923577No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC574630.168272162645618No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA554140.1622719597104968No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT536980.15724689956571006No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCAT533500.1562278314244596No Hit
CAATACCCTTCGGTGGGCTGAGGT520820.15251467509369643No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC509050.14906799922515682No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT505040.1478937281773366No Hit
TTACGATCTGCTGAGGGTAAGCCCTT503810.14753354029982566No Hit
TCTGGCGGGCATGCCTGTTCGAGCG497920.14580873818719198No Hit
ATGGCTCAGTGAGGCTTTCGGACTGGCC497000.1455393293682407No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGCC484020.1417383223356456No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC480210.14062261842238002No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTC453540.1328126910295209No Hit
ACCAGCGGAGGGATCATTA440100.12887697958745017No Hit
AGGCCAGCATCAGCTCGCTGTCGGG438290.12834694701973084No Hit
TTCTGGCGGGCATGCCTGTTCGAGC437220.1280336128498636No Hit
CCGGAGCTAGGGTTTAACGGCCGG432050.12651965242162655No Hit
GTGAGGCTTTCGGACTGGC428850.12558257826875258No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT428270.12541273357854416No Hit
AGGCCAGCATCAGCTCGCTGTCGG427600.12521653367778615No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG427520.12519310682396434No Hit
TTACGATCTGCTGAGGGTAAGCC426490.12489148608100802No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA418510.12255465741227853No Hit
TTACGATCTGCTGAGGGTAAGC417600.12228817695005498No Hit
ACTATGCCGACTAGGGATCGGACGATG405730.11881221751423804No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC397350.11635825457639928No Hit
CTGGCGGGCATGCCTGTTCGAGC390860.11445775106010174No Hit
ATGATTAATAGGGACAGTCGGGGGC386340.11313413381916723No Hit
GGCGCATCATCGACCGATCCTGA383760.11237861778341257No Hit
TTCGAGCGTCATT380260.11135369292870666No Hit
AATACCCTTCGGTGGGCTGAG377420.110522039618031No Hit
TTACGATCTGCTGAGGGTAAGCCC374170.10957032368151837No Hit
GTGTAGTGGC371220.10870645844683767No Hit
TCCGGAGCTAGGGTTTAACGGCCGG368110.10779573950451325No Hit
TCTGGCGGGCATGCCTGTTCGAGCGT362340.10610607767261235No Hit
ACTCTGGTGGAGGCTCGCAGCGG362230.1060738657486073No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA356600.10442520091089465No Hit
ACTCTGGTGGAGGCTCGCAGCGGT355890.10421728758322572No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCA355030.10396544890464085No Hit
ATTGCGCCCGCCAG354370.10377217736061059No Hit
ATCTGCTGAGGGTAAGCCCTTC353660.10356426403294167No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCAT351140.10282631813755341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)