FastQCFastQC Report
Thu 21 Sept 2023
SRR18590144_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590144_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63462562
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT28876524.5501661278660634No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA17261472.7199453435239502No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT15057322.3726303391281305No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC10674981.682090931027966No Hit
AATACCCTTCGGTGGGCTGAGG10490991.653099034986958No Hit
GTGAGGCTTTCGGACTGGCC8808161.3879300996389021No Hit
TACGATCTGCTGAGGGTAAGCCCTTC8477821.3358773634130938No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT8339541.3140881390826926No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT8240011.2984048768784344No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT6849621.079316652863778No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG6419411.0115270795402178No Hit
AGTGAGGCTTTCGGACTGGCC5708460.899500401512312No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT5095850.8029694735614361No Hit
AAATACCCTTCGGTGGGCTGAGG4971760.7834162131683243No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG4957480.7811660676415806No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC4757440.7496451214812285No Hit
AATACCCTTCGGTGGGCTGAGGT4636850.7306433673446716No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC3973110.6260557208516101No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC3902160.6148759011651626No Hit
CCAGCGGAGGGATCATTA3884550.6121010368286108No Hit
GGCCGGAAAGTTATCCAAACT3405540.5366218905565143No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT3018060.4755654207594077No Hit
AAATACCCTTCGGTGGGCTGAGGT2567370.40454874796892065No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2478360.39052315599865No Hit
GGCGCATCATCGACCGATCCTG2460660.3877341100726441No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT2396410.37761003093445866No Hit
CAATACCCTTCGGTGGGCTGAGG2170310.34198272676101543No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG2082700.32817773729336674No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT2023750.31888879620082156No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT2018930.3181292932989374No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC1822860.28723391280673477No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC1770440.2789739248157047No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA1700100.26789022479111385No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1540330.24271475204546578No Hit
AATGGCTCAGTGAGGCTTTCGGACTGGCC1527310.24066314877108178No Hit
ACGATCTGCTGAGGGTAAGCCCTTC1499180.23623061420054237No Hit
ATGCCTGTTCGAGCGTCATT1451420.22870491739681106No Hit
TGAGGGTAAGCCCTTC1413170.22267774187874737No Hit
ATACCCTTCGGTGGGCTGAGG1411130.22235629251778394No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA1357520.21390879239952523No Hit
ACCAGCGGAGGGATCATTA1348520.2124906334540985No Hit
GCGGGCATGCCTGTTCGAGCGTCATT1346030.21209827614586374No Hit
CGGGCATGCCTGTTCGAGCGTCATT1344620.21187609791108022No Hit
TTCGCCTCGATTTC1311840.2067108478854037No Hit
ACTCTGGTGGAGGCTCGCAG1276470.20113748322987654No Hit
CGGCGCATCATCGACCGATCCTG1224260.1929105856142398No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG1216310.19165787854577948No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC1190750.18763030714076748No Hit
CAATACCCTTCGGTGGGCTGAGGT1114580.1756279552659724No Hit
CCGGAGCTAGGGTTTA1104920.174105797997881No Hit
CCGGAGCTAGGGTTTAACGGCCGG1080740.1702956776311678No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1080240.17021689102308854No Hit
ACTATGCCGACTAGGGATCGGACGATG1027480.1619033281385646No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT994450.1566986848088484No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA983390.1549559250381351No Hit
CGGCGCATCATCGACCGATCCTGA974760.15359606818268698No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC957490.1508747787396292No Hit
TCTGGCGGGCATGCCTGTTCGAGC942170.14846075706808057No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT935300.14737822907307147No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA925640.1458560718049801No Hit
ACTCTGGTGGAGGCTCGC911000.1435491999204192No Hit
GGCGCATCATCGACCGATCCTGA908790.14320096311270886No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAA883710.139249026851453No Hit
ATGGCTCAGTGAGGCTTTCGGACTGGCC878520.13843122185959023No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT873320.13761184113556588No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT838360.13210308149866373No Hit
AATACCCTTCGGTGGGCTGAG835020.13157678695669425No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC822120.12954409246824924No Hit
ACTGGTGATTCATA809530.12756024567681334No Hit
TTACGATCTGCTGAGGGTAAGCCCTT774170.1219884567534478No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC769660.12127780154857284No Hit
AAAAGCTTCGGG768680.12112337979673748No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCAT754260.11885117401973151No Hit
ATAACTTCTCGAATCGCAT742420.11698550714041454No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC740610.11670029961916759No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT711270.11207710145707639No Hit
CTATGCCGACTAGGGATCGGACGATG711080.11204716254600625No Hit
GTGAGGCTTTCGGACTGGC708660.11166583536290262No Hit
TTCGAGCGTCATT706600.11134123453761605No Hit
TAGGTGGGAGCTTCGGCGCCGG677920.10682203469818946No Hit
ATGATTAATAGGGACAGTCGGGGGC677110.10669440039310105No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGG677090.10669124892877789No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA661990.10431189336478411No Hit
TGTTCGAGCGTCATT656990.10352402728399147No Hit
TTCGCCTCGATTTCA647160.10197508256915312No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA643990.1014755754739306No Hit
ACGACCAGCGAATACCTGGTGTTGTATGT642700.1012723060250861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)