FastQCFastQC Report
Thu 21 Sept 2023
SRR18590145_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590145_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59761395
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT21853243.656748641828057No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA17336162.9008961387196535No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT11278171.8871999222909706No Hit
GTGAGGCTTTCGGACTGGCC9399301.5728046508954485No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT7861771.3155265200887631No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC7371641.2335120356544556No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC7270731.2166265529778881No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT6804761.1386548121910474No Hit
AATACCCTTCGGTGGGCTGAGG6735891.1271306501463025No Hit
AATACCCTTCGGTGGGCTGAGGT6448211.0789925502910365No Hit
AGTGAGGCTTTCGGACTGGCC5813150.9727266239350671No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG5594140.9360792197036231No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC5407510.9048500290195702No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT5273700.8824593201012125No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT5051900.8453450592978963No Hit
AAATACCCTTCGGTGGGCTGAGGT4952530.8287172680624338No Hit
AAATACCCTTCGGTGGGCTGAGG4406180.7372953727067448No Hit
GGCCGGAAAGTTATCCAAACT3179560.5320424665455015No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC3008560.5034286766565607No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT2716390.45453925565157904No Hit
ACTATGCCGACTAGGGATCGGACGATG2395070.40077210379710854No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG2275770.38080938371669537No Hit
CCAGCGGAGGGATCATTA2252700.3769490320632575No Hit
ATGATTAATAGGGACAGTCGGGGGC2138620.35785978556892795No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA2031230.3398899908544638No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT1992540.33341591172696017No Hit
CTATGCCGACTAGGGATCGGACGATG1976860.3307921443266176No Hit
GGCGCATCATCGACCGATCCTG1934970.3237826024643501No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1927650.3225577314585779No Hit
TACGATCTGCTGAGGGTAAGCCCTTC1838970.30771872042143594No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT1780880.2979983984644268No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC1638790.2742221797198676No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC1508920.2524907592936878No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1462400.24470646978705904No Hit
AATGGCTCAGTGAGGCTTTCGGACTGGCC1455580.24356526483359364No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1453120.24315362785624398No Hit
CCGGAGCTAGGGTTTAACGGCCGG1346500.22531267886233244No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG1345570.2251570600050417No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1324050.2215560731137551No Hit
GTGAGGCTTTCGGACTGGC1209370.20236642735665727No Hit
CAATACCCTTCGGTGGGCTGAGGT1183770.1980827254785468No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA1176580.19687960764637438No Hit
ACTCTGGTGGAGGCTCGCAG1152480.19284690392518447No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT1109850.1857135363055029No Hit
CAATACCCTTCGGTGGGCTGAGG1099860.18404188858041215No Hit
AACTATGCCGACTAGGGATCGGACGATG1063010.17787570052539772No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC1045380.17492563552105836No Hit
ATGCCTGTTCGAGCGTCATT1042180.17439017278629457No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA1040290.17407391510857467No Hit
CGGGCATGCCTGTTCGAGCGTCATT1018320.17039762877021195No Hit
ATGGCTCAGTGAGGCTTTCGGACTGGCC1017600.17027714965489008No Hit
ACCAGCGGAGGGATCATTA1013280.16955427496295894No Hit
TGAGGGTAAGCCCTTC1009590.16893681949693443No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1007690.16861888849816842No Hit
GCGGGCATGCCTGTTCGAGCGTCATT992090.16600850766619488No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCAT975900.16329940089249925No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC943800.1579280403343998No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA908640.15204464353618252No Hit
ATACCCTTCGGTGGGCTGAGG837100.1400737047721192No Hit
TCCGGAGCTAGGGTTTAACGGCCGG828130.13857273579373441No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC813370.13610291392963633No Hit
AATACCCTTCGGTGGGCTGAG812940.13603096112465246No Hit
TTCGAGCGTCATT756120.12652315094050265No Hit
ACTCTGGTGGAGGCTCGC739120.12367850516206992No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT735220.12302590995407654No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT734440.12289539091247786No Hit
AATACCCTTCGGTGGGCTGAGGTACGCGCTC729100.12200183747384076No Hit
GCCGGAAAGTTATCCAAACT726750.1216086070279986No Hit
TCTGGCGGGCATGCCTGTTCGAGC714190.11950691579405066No Hit
GTGTAGTGGC714140.11949854918881997No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGG698540.11688816835684643No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC684740.11457898531317752No Hit
AATACCCTTCGGTGGGCTGAGGTACGCGCT680910.11393810335250708No Hit
AGTGAGGCTTTCGGACTGGC674540.11287219784611789No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCAT672850.11258940658932075No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCAT662950.11093281875364522No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGC648310.10848307674210082No Hit
AAATACCCTTCGGTGGGCTGAGGTACGCGCTC643190.10762633636647874No Hit
TCTATGCCGACTAGGGATCGGACGATG641390.10732513857817409No Hit
ATACCCTTCGGTGGGCTGAGGT626280.10479675047746125No Hit
TGTGAGGCTTTCGGACTGGCC622590.10417929501143673No Hit
TTACGATCTGCTGAGGGTAAGCCCTT622540.10417092840620604No Hit
ATGTATTTATTAGATT615780.1030397633790175No Hit
AAATACCCTTCGGTGGGCTGAGGTACGCGCT613150.1025996799438835No Hit
GGCGCATCATCGACCGATCCTGA605720.1013564024066038No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT602310.1007857999298711No Hit
CCGGAGCTAGGGTTTA600250.10044109579436691No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGT597920.100051211990617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)