FastQCFastQC Report
Thu 21 Sept 2023
SRR18590146_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590146_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39104092
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT14677173.753359111368703No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA9559872.4447236877409146No Hit
AATACCCTTCGGTGGGCTGAGG8020262.0510027441629384No Hit
TACGATCTGCTGAGGGTAAGCCCTTC7185231.8374624323203823No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT5919981.5139029439681146No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT5585531.4283748104929785No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT4688481.1989742659157No Hit
GTGAGGCTTTCGGACTGGCC4535381.1598223531184408No Hit
AAATACCCTTCGGTGGGCTGAGG4530951.158689479351675No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT4518151.1554161646305456No Hit
CCAGCGGAGGGATCATTA4052851.0364260599632384No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT3622850.9264631435502965No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC3319880.8489853184674382No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG3109150.7950958175937187No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT2849400.7286705442489242No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC2679500.6852224058801826No Hit
CAATACCCTTCGGTGGGCTGAGG2000070.5114733261163563No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG1989790.5088444452309492No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1910150.48847829020042205No Hit
AGTGAGGCTTTCGGACTGGCC1690910.43241254649257677No Hit
ACCAGCGGAGGGATCATTA1562680.39962058190738703No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC1461160.3736591045254292No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1427840.3651382571419891No Hit
AATACCCTTCGGTGGGCTGAGGT1387180.35474036834815137No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC1230950.31478802781049103No Hit
GGCCGGAAAGTTATCCAAACT1216120.31099558583280745No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1205200.30820303921134395No Hit
ACGATCTGCTGAGGGTAAGCCCTTC1179020.30150808769578386No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT1173890.3001962045302062No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT1159570.29653418368594264No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT1159110.29641654893815206No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA1125070.28771157760164845No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1115020.28514151409013666No Hit
GCGGGCATGCCTGTTCGAGCGTCATT970120.24808656853610103No Hit
ATGCCTGTTCGAGCGTCATT959700.2454218857709316No Hit
CGGCGCATCATCGACCGATCCTG954030.24397190964055626No Hit
TGAGGGTAAGCCCTTC952920.24368805187958334No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA938560.24001580192681624No Hit
AAATACCCTTCGGTGGGCTGAGGT926530.23693939754437973No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC904920.23141312167534794No Hit
CGGGCATGCCTGTTCGAGCGTCATT845290.21616407817371133No Hit
CGGCGCATCATCGACCGATCCTGA840200.2148624241166372No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA824160.21076055160672186No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTC802150.20513198465265475No Hit
ACGACCAGCGAATACCTGGTGTTGTATGT790900.20225504788603707No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG790410.20212974130686887No Hit
ATACCCTTCGGTGGGCTGAGG777960.1989459312851453No Hit
GGCGCATCATCGACCGATCCTG747870.19125108441336525No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC725420.18550999726575929No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAA701480.17938787582639687No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA673840.17231956185045802No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT661760.1692303710823921No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG661760.1692303710823921No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT660970.1690283461894474No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCT648590.165862437107605No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC625810.16003695981484495No Hit
TTACCCAATCCCGACACGGGGAGGTAGT611840.15646444366998727No Hit
ACTCTGGTGGAGGCTCGCAG594370.15199688053107077No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA590600.15103278705461312No Hit
ATAACTTCTCGAATCGCAT585790.14980273675706368No Hit
AATACCCTTCGGTGGGCTGAG577950.1477978314903719No Hit
TACGATCTGCTGAGGGTAAGCCCTT576010.14730171972795073No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA569470.14562926048762365No Hit
TTCGAGCGTCATT566190.14479047359033423No Hit
TGCACAATACCCTTCGGTGGGCTGAGG554700.1418521621726954No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTT526580.13466109889471414No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC499010.12761068585865643No Hit
ACTGGTGATTCATA481600.12315846638249522No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA476550.12186704143392461No Hit
AATGGCTCAGTGAGGCTTTCGGACTGGCC465410.11901823471569165No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC464970.11890571452215283No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT464260.11872414784621517No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG457300.11694428296660103No Hit
TCTGGCGGGCATGCCTGTTCGAGC449030.11482941478349633No Hit
CAATACCCTTCGGTGGGCTGAGGT445630.1139599405606963No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC445240.1138602067527869No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCAT441410.11288076961357395No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC435210.11129525779552686No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA432390.11057410564602804No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT429530.10984272438802568No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCAT429220.10976344879712333No Hit
TCCAGCGGAGGGATCATTA420120.10743632661257038No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA416100.10640830120796564No Hit
ACTCTGGTGGAGGCTCGCAGCGGT414370.105965892265188No Hit
ATCTGCTGAGGGTAAGCCCTTC413220.10567180539571154No Hit
GTGAGGCTTTCGGACTGGC412930.10559764435906095No Hit
AATCCCGACTTCGGAAGGGATGTATTTATTAGATT398210.10183333242976209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)