FastQCFastQC Report
Thu 21 Sept 2023
SRR18590147_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590147_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52015786
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT20057963.856129368111442No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT15899613.056689367339369No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC11386772.1890989016295936No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA11169482.1473250447469927No Hit
TACGATCTGCTGAGGGTAAGCCCTTC9677661.8605236494936364No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT8423641.6194391448780567No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG5770891.1094497351246408No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT5505111.0583537082377261No Hit
CCAGCGGAGGGATCATTA5496621.0567215114273194No Hit
GTGAGGCTTTCGGACTGGCC5474461.052461266277895No Hit
AATACCCTTCGGTGGGCTGAGG5131570.9865408935664263No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT4728960.9091393908764542No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT4638870.8918196487504774No Hit
AGTGAGGCTTTCGGACTGGCC4543900.8735617298948438No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT4019130.7726750490706802No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC3377710.6493624839197855No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG3362140.6463691618540571No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC3188960.6130754229110371No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC2964540.5699308283066221No Hit
AATACCCTTCGGTGGGCTGAGGT2234660.4296118874374022No Hit
AAATACCCTTCGGTGGGCTGAGG2157190.4147183318541029No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT2133030.4100735880449831No Hit
ACGATCTGCTGAGGGTAAGCCCTTC1999100.3843256352984842No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT1944650.37385765928827835No Hit
GGCCGGAAAGTTATCCAAACT1835950.35296015713383627No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC1780170.342236489514933No Hit
ACCAGCGGAGGGATCATTA1759270.33821847852111664No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA1754070.33721878200590877No Hit
TGAGGGTAAGCCCTTC1684800.3239016709273604No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC1621070.3116496211361681No Hit
AATGGCTCAGTGAGGCTTTCGGACTGGCC1582440.30422302952415253No Hit
TCTGGCGGGCATGCCTGTTCGAGC1570530.30193334000566674No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1544340.29689833005695615No Hit
CAATACCCTTCGGTGGGCTGAGG1437850.2764256989214774No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA1222010.23493060356715553No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1209460.23251787447756722No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAA1167990.22454529476878424No Hit
TTCTGGCGGGCATGCCTGTTCGAGC1166640.22428575817348986No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCAT1159520.22291694294497444No Hit
GGCGCATCATCGACCGATCCTG1158260.22267470878936635No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1120750.21546343642678012No Hit
AAATACCCTTCGGTGGGCTGAGGT1101380.2117395669076307No Hit
ATGCCTGTTCGAGCGTCATT1062420.20424953301676532No Hit
CGGCGCATCATCGACCGATCCTG1039790.19989893068231246No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC1013890.19491967303925775No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGCC1003760.1929721873279008No Hit
TTACGATCTGCTGAGGGTAAGCCCTT998290.19192058349363403No Hit
CGGCGCATCATCGACCGATCCTGA984010.18917526306340926No Hit
ACTCTGGTGGAGGCTCGCAG966830.1858724195766262No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT954630.1835269777524846No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT949690.1825772660630371No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG934990.1797512009142763No Hit
CAATACCCTTCGGTGGGCTGAGGT890330.1711653458432792No Hit
ATGGCTCAGTGAGGCTTTCGGACTGGCC877910.16877760916657109No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG857280.1648115054918136No Hit
TACGATCTGCTGAGGGTAAGCCCTT832130.1599764348461446No Hit
ATGATTAATAGGGACAGTCGGGGGC807720.15528362870456286No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT790200.15191542044563164No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA779360.14983143771008287No Hit
CGGGCATGCCTGTTCGAGCGTCATT777420.14945847401017837No Hit
CTATGCCGACTAGGGATCGGACGATG753400.14484064510723726No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTC740840.14242599352435048No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGC737020.14169160108433237No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGG733770.14106679076232742No Hit
ACTATGCCGACTAGGGATCGGACGATG731040.14054195009184328No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC723720.1391346849973583No Hit
TTTCTGGCGGGCATGCCTGTTCGAGC721280.13866559663252997No Hit
GCGGGCATGCCTGTTCGAGCGTCATT718990.1382253456671788No Hit
AAGGTAGCCAAATGCCTCGTCATCTA718270.13808692614968848No Hit
AAAAGCTTCGGG711190.13672580089436695No Hit
TTCGAGCGTCATT699450.13446879376195528No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC693060.13324032054422863No Hit
TCTGCTGAGGGTAAGCCCTTC691800.13299808638862057No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT687100.13209451453833648No Hit
AATCCCGACTTCGGAAGGGATGTATTTATTAGATT671940.12918001469784576No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA671560.12910695995250365No Hit
TCTGTGGAACCGCATGCCCT669810.12877052362527022No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA667740.12837256751248555No Hit
TTAAGCCATGCATGTCTAAGTATAAGCAA657570.1264173918279347No Hit
TACCATCTGCTGGATAATGGCTG643760.12376242858273834No Hit
ATACCCTTCGGTGGGCTGAGG643120.12363938901163582No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA637950.12264545997632335No Hit
ATCTGCTGAGGGTAAGCCCTTC635280.12213215426563005No Hit
TAAGGTAGCCAAATGCCTCGTCATCTA634060.1218976100832159No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCAT631330.12137276941273174No Hit
ACGACCAGCGAATACCTGGTGTTGTATGT603120.11594941581772888No Hit
ATAACTTCTCGAATCGCAT589420.11331559999881574No Hit
TTACCCAATCCCGACACGGGGAGGTAGT585030.11247162544078446No Hit
GGCGCATCATCGACCGATCCTGA576180.11077021887163255No Hit
ACTCTGGTGGAGGCTCGCAGCGGT573990.11034919283926614No Hit
ACTGGTGATTCATA570410.10966094023841147No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTC568310.10925721664573136No Hit
TGTTCGAGCGTCATT566430.10889578790561773No Hit
CACTGGTGATTCATAATAACTTCTCGAATCGCAT560680.10779035425899361No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT554590.10661955584022127No Hit
GTGAGGCTTTCGGACTGGC546510.10506618125505206No Hit
TCTGTGGAACCGCATGCCC535620.10297258605301089No Hit
CCGGAGCTAGGGTTTAACGGCCGG533760.10261500229949423No Hit
CAACTTCTGGTTTTAAGGTCCT529830.10185946243319288No Hit
ACTCTGGTGGAGGCTCGCAGCGG527320.10137691661527522No Hit
TTCGCCTCGATTTC524750.1008828358375667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)