FastQCFastQC Report
Sat 23 Sept 2023
SRR18590148_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590148_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82626190
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT38217034.625292537390385No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA24294822.9403292103871665No Hit
AATACCCTTCGGTGGGCTGAGG18241822.207752771851153No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT16186401.958991452952145No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT15861711.9196951959179045No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT12006681.4531324753083739No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC11608011.4048826407220276No Hit
AAATACCCTTCGGTGGGCTGAGG10528071.2741807409974972No Hit
GTGAGGCTTTCGGACTGGCC10452131.2649899505229516No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC10138061.226979000241933No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC9386211.1359848493558762No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT9343921.130866617473225No Hit
AATACCCTTCGGTGGGCTGAGGT7348170.8893269797385066No Hit
TACGATCTGCTGAGGGTAAGCCCTTC7124450.8622508190199742No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG6534240.79081947261516No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC5396660.6531415765388674No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG5312900.6430043549145859No Hit
CCAGCGGAGGGATCATTA5077440.614507337201437No Hit
AAATACCCTTCGGTGGGCTGAGGT4809070.582027320877315No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC4421880.5351668762652617No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT4405340.5331650896646692No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT4241450.5133299744306254No Hit
AGTGAGGCTTTCGGACTGGCC3901200.47215053725701256No Hit
ATTCTGGCGGGCATGCCTGTTCGAGCGTCATT3296130.39892072961369757No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT3254310.3938593804216315No Hit
GGCCGGAAAGTTATCCAAACT3177350.3845451424058159No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA3149850.38121689987157825No Hit
TGTTACGATCTGCTGAGGGTAAGCCCTTC3127620.3785264696339018No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT3125090.3782202713207519No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG2927410.3542956537146394No Hit
ATACCCTTCGGTGGGCTGAGG2863730.34658865427535746No Hit
GGCGCATCATCGACCGATCCTG2762870.33438187092978633No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2689170.3254621809380295No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC2270500.2747918063267833No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT2266760.274339165342127No Hit
CAATACCCTTCGGTGGGCTGAGG2246410.27187626586679114No Hit
GCGGGCATGCCTGTTCGAGCGTCATT2237650.27081606933588487No Hit
CGGGCATGCCTGTTCGAGCGTCATT2121880.2568047734017507No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG2072000.25076794657964985No Hit
ACCAGCGGAGGGATCATTA1968110.23819445142030635No Hit
ATGCCTGTTCGAGCGTCATT1962300.23749128454307283No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT1953580.2364359290922164No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1873120.22669809657204334No Hit
AATACCCTTCGGTGGGCTGAG1708460.2067697905470408No Hit
TGAGGGTAAGCCCTTC1659960.2008999809866581No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTC1611930.19508705411686053No Hit
AATGGCTCAGTGAGGCTTTCGGACTGGCC1483030.1794866736563794No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT1477280.17879076839922065No Hit
ACTATGCCGACTAGGGATCGGACGATG1443420.1746927941370648No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA1377210.166679596384633No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA1361860.1648218319155222No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCAT1342280.162452123231145No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT1320260.15978710866372997No Hit
GTGAGGCTTTCGGACTGGC1319200.15965882004241028No Hit
AGGCCAGCATCAGCTCGCTGTCGGG1312030.1587910564434836No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC1291970.1563632547985088No Hit
CCGGAGCTAGGGTTTAACGGCCGG1289610.1560776310755706No Hit
ACTCTGGTGGAGGCTCGCAG1273920.15417871742603645No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA1265680.15318145493577764No Hit
AATACCCTTCGGTGGGCTGAGGTACGCGCTC1247410.1509702916230314No Hit
CTATGCCGACTAGGGATCGGACGATG1241910.15030464311618388No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA1238710.14991735671219986No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA1224520.14819998356453323No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG1223080.14802570468274043No Hit
ATGATTAATAGGGACAGTCGGGGGC1209880.14642814826630635No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT1202320.14551318413689412No Hit
ACTCTGGTGGAGGCTCGCAGCGGTT1190760.14411411200250188No Hit
ACTCTGGTGGAGGCTCGCAGCGGTTC1140710.1380567105901894No Hit
CAATACCCTTCGGTGGGCTGAGGT1137820.1377069425565913No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCAT1115240.1349741528684791No Hit
ACGATCTGCTGAGGGTAAGCCCTTC1114580.1348942750476574No Hit
TCTGGCGGGCATGCCTGTTCGAGC1084610.13126709582034463No Hit
TTCGAGCGTCATT1067840.12923747300946586No Hit
TTACGATCTGCTGAGGGTAAGCCCTT1055730.12777183602438888No Hit
AAATACCCTTCGGTGGGCTGAG1050180.1271001361674791No Hit
ATTGCGCCCGC1006130.12176889676263664No Hit
CGGCGCATCATCGACCGATCCTG992280.12009267279539332No Hit
ACGACCAGCGAATACCTGGTGTTGTATGT986830.11943307563860804No Hit
ATCGAATCTTTGAACGCACATTGCGCCCGC979270.1185181115091958No Hit
AAATACCCTTCGGTGGGCTGAGGTACGCGCTC949210.11488003985177096No Hit
AATACCCTTCGGTGGGCTGAGGTACGCGCT946020.1144939637177994No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGG937970.11351969635777712No Hit
TACCCTTCGGTGGGCTGAGG900940.10903806650167458No Hit
AATACCCTTCGGTGGGCTGA867070.10493888196950628No Hit
TCTTTGAACGCACATTGCGCCCGC866480.10486747603877172No Hit
ACTGGTGATTCATA857230.10374797627725543No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC857040.10372498114701889No Hit
GTTACGATCTGCTGAGGGTAAGCCCTT856720.10368625250662049No Hit
ATGGCTCAGTGAGGCTTTCGGACTGGCC853750.10332680231292281No Hit
TGTTCGAGCGTCATT835600.10113016224032598No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT833770.10090868282804763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)