FastQCFastQC Report
Thu 21 Sept 2023
SRR18590149_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590149_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64219228
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCGGGCATGCCTGTTCGAGCGTCATT20182013.1426740290306823No Hit
AAATACCCTTCGGTGGGCTGAGG15133862.3565932620678653No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCATT11222311.7474999855183562No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT10275751.600104878246123No Hit
TACGATCTGCTGAGGGTAAGCCCTTC9800701.5261317062235629No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA8632131.3441659560279984No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC8016341.2482772293681264No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC7975771.2419598068042799No Hit
AATACCCTTCGGTGGGCTGAGG5250410.817576006986568No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC5092020.7929120543149475No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT3936570.6129893059443193No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG3928000.6116548146608053No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT3916670.6098905455543626No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT3623790.5642842670111201No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC3274100.5098317282792624No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA2989580.46552724053300676No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCG2915830.4540431410978656No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT2871200.4470935091278269No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA2800840.436137288975196No Hit
ATACCCTTCGGTGGGCTGAGG2720790.4236721749442394No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG2643550.4116446245663371No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT2542960.3959810915198171No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2399120.3735828154147228No Hit
CCGGAGCTAGGGTTTA2253970.35098055056034No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT2190350.3410738603086291No Hit
ACGATCTGCTGAGGGTAAGCCCTTC2169000.33774931084503224No Hit
GCGGGCATGCCTGTTCGAGCGTCATT2058890.3206033557426134No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT2054030.31984657305441294No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA1913620.2979824048959293No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA1905850.2967724868944236No Hit
AAATACCCTTCGGTGGGCTGAG1851770.2883513330306618No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1803570.28084579278966104No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT1794260.2793960712202893No Hit
ATGCCTGTTCGAGCGTCATT1771330.2758254895247262No Hit
AGTGAGGCTTTCGGACTGGCC1770570.27570714490681825No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA1730030.26939439384104713No Hit
TTGGCGGGCATGCCTGTTCGAGCGTCATT1474840.2296570740464211No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA1420890.22125616334098566No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA1419080.22097431629044187No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG1371240.21352483402634487No Hit
GTGAGGCTTTCGGACTGGCC1272440.1981400336983185No Hit
TTACCCTTCGGTGGGCTGAGG1266200.1971683620986537No Hit
ATCGAATCTTTGAACGCACATTGCGCCCGC1241650.19334551950702367No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1231980.19183973996074818No Hit
GTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA1223380.1905005771791589No Hit
CAATACCCTTCGGTGGGCTGAGG1217370.18956472039807143No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC1205610.18773349315254925No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA1190040.1853089856514625No Hit
AAATACCCTTCGGTGGGCTGAGGT1187480.18491035114903592No Hit
TGGCGGGCATGCCTGTTCGAGCGTCA1181610.18399629469229994No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCG1172030.18250452964025043No Hit
ACCAGCGGAGGGATCATTA1171630.18244224299924627No Hit
GGCCAGCATCAGCTCGCTGTCGGGGAC1145760.17841385449230254No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA1143660.1780868496270307No Hit
GGCGCATCATCGACCGATCCTG1140590.17760879965732382No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA1099710.17124310494669914No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA1071930.16691729772896055No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA1046350.16293406703674482No Hit
CGGGCATGCCTGTTCGAGCGTCATT1033160.1608801650496328No Hit
TCCGGAGCTAGGGTTTA1017490.158440085888295No Hit
CGTATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA1011530.1575120149373331No Hit
TCGTATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA1002250.1560669648660367No Hit
TGAGGGTAAGCCCTTC959350.14938672261834104No Hit
TCGGGCATGCCTGTTCGAGCGTCATT934300.14548602172545583No Hit
TACGATCTGCTGAGGGTAAGCCCTT916650.14273762369114745No Hit
TTCGAGCGTCATT912350.1420680423003528No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG911970.14200886999139883No Hit
AGGGCCCGAGTTGTAATTTG908970.14154172018386768No Hit
TGGCGGGCATGCCTGTTCGAGCGTC900790.14026795837533268No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG897250.13971672160244591No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA871730.1357428339063808No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT860390.13397700763391301No Hit
AGGGCCCGAGTTGTAATTT847270.1319340058089767No Hit
CCAGCGGAGGGATCATTA818920.12751944012780722No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC809420.1260401324039585No Hit
ATCTTTGAACGCACATTGCGCCCGC798180.12428987779174175No Hit
AACGCACATTGCGCCCGC788950.12285261355057087No Hit
GGGGCCCGAGTTGTAATTT767130.1194548772837942No Hit
TTACGATCTGCTGAGGGTAAGCCCTT738050.1149266384827921No Hit
AAATACCCTTCGGTGGGCTGA738010.1149204098186917No Hit
ATAACTTCTCGAATCGCAT737430.11483009418923565No Hit
AACTTCTCGAATCGCAT734150.11431934373300158No Hit
GTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA733750.11425705709199743No Hit
TAGGTGGGAGCTTCGGCGCCGGTGAAATACCACTA723600.11267653357651698No Hit
GGGGCCCGAGTTGTAATT713610.1111209247174382No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGC708940.11039372818371469No Hit
TACCCTTCGGTGGGCTGAGG704350.10967898897819202No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAA701120.10917602435208346No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG690270.10748649921484574No Hit
TTAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG675530.10519123649384261No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGT662290.10312954867660509No Hit
CTCTAAGTCAGAATCCATGCCAGAACGCGACGATA659730.10273091417417848No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTT659550.10270288518572661No Hit
TTTCTTCTAAAGCTAAATACCG651120.10139019422656405No Hit
ATCATCGAATCTTTGAACGCACATTGCGCCCGC651030.10137617973233812No Hit
CGGCGCATCATCGACCGATCCTG644760.10039983663459796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)