FastQCFastQC Report
Thu 21 Sept 2023
SRR18590150_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590150_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45431819
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGGTGATTCATAATAACTTCTCGAATCGCAT15247673.3561654223001725No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCATT12754802.8074596793053788No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT8564811.885200766449611No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT8027461.766924630510612No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG7158461.5756489961363862No Hit
AAATACCCTTCGGTGGGCTGAGG6402031.4091511502103846No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA6271151.380343146727187No Hit
TACGATCTGCTGAGGGTAAGCCCTTC6263521.378663707037572No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT4871031.072162662032088No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC4849181.0673532574163496No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG4657111.0250767199085733No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT4072390.8963739708506939No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC4034760.8880912296291725No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG2851800.6277098436230344No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA2506630.5517344572974284No Hit
AATACCCTTCGGTGGGCTGAGG2435350.5360450128576185No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC2095850.46131765052154305No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2040310.44909273828547347No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1700800.3743631748488873No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG1543600.33976187482169706No Hit
CAATACCCTTCGGTGGGCTGAGG1490170.3280013947933716No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT1385990.30507032967357084No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT1338330.29457988463988205No Hit
TACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC1299340.28599779374891415No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1244860.2740061981669719No Hit
TTAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1196440.26334846949447477No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1185540.2609492699378821No Hit
ATGCCTGTTCGAGCGTCATT1177360.25914876972018225No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA1137580.2503927918888742No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTC1110440.2444190051030094No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAAC1087070.23927503320965424No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAA1040810.22909274224745435No Hit
ACGATCTGCTGAGGGTAAGCCCTTC1014890.2233874897238871No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC998350.21974686947929598No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAGG955680.2103547736004143No Hit
GCGGGCATGCCTGTTCGAGCGTCATT945950.20821310280356595No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA941260.20718078666407788No Hit
TTACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC928380.2043457692063793No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA921830.2029040483719131No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA914810.20135887581344694No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA898130.19768744016170695No Hit
ACCAGCGGAGGGATCATTA881220.1939653791982223No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCG878960.19346793048281866No Hit
TTCGAGCGTCATT865170.1904326128786523No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT861970.18972826071524893No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG857690.18878618969669692No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG814100.17919159257083675No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG791630.17424571972343877No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC790220.17393536455143915No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAA743260.1635989965534948No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCT724250.15941470448277673No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGCC705760.15534486963861166No Hit
TGAGGGTAAGCCCTTC691820.15227653552678577No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG688810.15161400427308447No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC686540.15111435445717022No Hit
AGTGAGGCTTTCGGACTGGCC678120.14926102782721512No Hit
AAATACCCTTCGGTGGGCTGAGGT671550.1478149047917276No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTT659630.14519119298305005No Hit
TACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCT653060.14374506994756253No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT648140.14266212849632984No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAAC647860.14260049768203206No Hit
CGGGCATGCCTGTTCGAGCGTCATT624910.13754897201012356No Hit
TTGGCGGGCATGCCTGTTCGAGCGTCATT624110.13737288396927272No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA623950.13733766636110256No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGC606800.13356277898536265No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAA593420.13061770650213236No Hit
CCAGCGGAGGGATCATTA592030.130311753531154No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA587380.1292882417937085No Hit
ATCGAATCTTTGAACGCACATTGCGCCCGC582810.12828233886034807No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC577560.12712676109226442No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAGG573570.12624852198852085No Hit
ATAACTTCTCGAATCGCAT572780.12607463504818067No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA555280.12222270915456851No Hit
ATACCCTTCGGTGGGCTGAGG554260.12199819690248369No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA554030.12194757159073909No Hit
TCCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG550350.12113756660282521No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGC543820.11970024796938022No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCA527730.1161586772477677No Hit
ACAATACCCTTCGGTGGGCTGAGG521180.11471695641330143No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT507580.11172345971883714No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC502500.1106053006594343No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG498160.10965002303781848No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC485630.10689204409799219No Hit
ACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC484200.10657728672497133No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT478570.10533806713748353No Hit
TGCACAATACCCTTCGGTGGGCTGAGG468950.10322060844625218No Hit
GTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC463050.10192195914497722No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA462740.10185372502914752No Hit
CCTGTTCGAGCGTCATT460660.10139589612293534No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAA459990.10124842238872277No Hit
ACTGGTGATTCATA459050.10104151894072301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)