FastQCFastQC Report
Thu 21 Sept 2023
SRR18590151_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590151_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46647007
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCGGGCATGCCTGTTCGAGCGTCATT11976312.5674337476786024No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCATT7237101.5514607400213265No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT6631831.421705362575567No Hit
AAATACCCTTCGGTGGGCTGAGG6171591.3230409402258112No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA5249031.1252661933915717No Hit
TACGATCTGCTGAGGGTAAGCCCTTC4198860.9001349218396799No Hit
AATACCCTTCGGTGGGCTGAGG3874710.830644932910701No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC3163320.67813997155273No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2913510.6245866964197724No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT2638920.5657211833548077No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC2370510.5081805141324501No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG2223350.47663293810040164No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT2179190.4671660927784713No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT2177510.4668059410542674No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT2156820.46237050106987576No Hit
TACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCT2049880.4394451288160889No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2028890.4349453760238036No Hit
TACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC1872120.40133764637889846No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT1648650.3534310357789944No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG1601840.3433960939873377No Hit
GCGGGCATGCCTGTTCGAGCGTCATT1467250.31454322460602885No Hit
AGTGAGGCTTTCGGACTGGCC1422310.3049091659835753No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1382230.2963169748489973No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA1337300.2866850599868069No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA1325560.284168285437906No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT1303830.27950989438615No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA1302020.2791218737785256No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA1241310.26610710522113457No Hit
ATGCCTGTTCGAGCGTCATT1231350.26397191999906877No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG1195130.25620722032605436No Hit
TACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCTA1155960.24781011137542008No Hit
GTGAGGCTTTCGGACTGGCC1138150.24399207434680645No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT1117410.23954591556109914No Hit
AGGGCCCGAGTTGTAATTTG1039790.22290604839877506No Hit
CCAGCGGAGGGATCATTA1033150.22148259158406455No Hit
ACCAGCGGAGGGATCATTA1018290.21829696383307082No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG997180.21377148591762812No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA996490.21362356645947297No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCG985050.21117110471846565No Hit
TTACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC978420.20974979166401825No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC972350.20844852918430545No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT937910.2010654188381261No Hit
AACGCACATTGCGCCCGC929260.19921106621052878No Hit
CGGGCATGCCTGTTCGAGCGTCATT920650.19736528862398395No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA894010.19165431128303687No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA892790.19139277253093645No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA876740.1879520373086316No Hit
ACGATCTGCTGAGGGTAAGCCCTTC876390.18787700569942248No Hit
ATAACTTCTCGAATCGCAT862510.1849014664542143No Hit
AGGGCCCGAGTTGTAATTT841780.18045745142877012No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA838270.17970499157641562No Hit
CAATACCCTTCGGTGGGCTGAGG790290.16941922983397414No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG785410.1683730748255724No Hit
TCTTCTAAAGCTAAATACCG765080.16401481021065295No Hit
GGCGCATCATCGACCGATCCTG761950.16334381324829694No Hit
TGGCGGGCATGCCTGTTCGAGCGTCA751570.16111859009518018No Hit
TTCGAGCGTCATT738170.1582459513426017No Hit
TTTCTTCTAAAGCTAAATACCG734100.15737344091551253No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC723070.1550088733452931No Hit
TGGCGGGCATGCCTGTTCGAGCGTC714830.1532424148884836No Hit
GGCCAGCATCAGCTCGCTGTCGGGGAC711220.15246851743349793No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC697650.14955943475644642No Hit
ATCGAATCTTTGAACGCACATTGCGCCCGC694930.14897633196487825No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA683410.14650672014176602No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCG674950.14469309895916796No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA662530.14203054871237505No Hit
TGGCGGGCATGCCTGTTCGAGC651160.13959309329320957No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG640230.1372499633256213No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT623120.13358198951542594No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGATGCTT620260.1329688740801741No Hit
ATACCCTTCGGTGGGCTGAGG609360.13063217539337518No Hit
GGGGCCCGAGTTGTAATTT606970.13011981669048991No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT603840.1294488197281339No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA593970.12733292834843615No Hit
TTGGCGGGCATGCCTGTTCGAGCGTCATT593820.12730077194448938No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGT590010.1264839992842413No Hit
GGGGCCCGAGTTGTAATT565460.12122106783828597No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGATGCT563280.12075372810092617No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG556850.11937529025174112No Hit
ACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC552360.11841274189360101No Hit
TTTCTTCTAAAGCTAAATACCGG522940.11210579919950704No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAA520700.11162559690056856No Hit
AATATTCCGGCACCTGGA515260.11045939131743222No Hit
ATCTTTGAACGCACATTGCGCCCGC512760.10992345125165265No Hit
CATGCCTGTTCGAGCGTCATT505960.10846569427273223No Hit
AGGGCCCGAGTTGTAATTTGC505580.10838423138273375No Hit
TCTTCTAAAGCTAAATACC501560.10752243975696019No Hit
TCGGGCATGCCTGTTCGAGCGTCATT500960.10739381414117308No Hit
TCTTCTAAAGCTAAATACCGG492620.10560591808173245No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG477110.102280945913636No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTT470090.10077602620892696No Hit
GGCCAGCATCAGCTCGCTGTCGGGG469830.1007202884420859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)